myRT

myRT report for GCA_002783345.1_ASM278334v1

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Seq: PFFU01000184.1 Actinobacteria bacterium CG17_big_fil_post_rev_8_21_14_2_50_50_24 CG17_8_21_14_2.50_scaffold_1169_c, whole genome shotgun sequence (22563 bp)
Overview 1 RT 1: 2-4053 bp Neighborhood of RT #1 [2, 4667] RVT-GII GIIM COG4584 Feature: gene Location: 2-139 bp Feature: gene Location: 780-1013 bp Feature: gene Location: 1036-2376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1318-1933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 31 8-1 933 bp Feature: domain Description: GIIM Note: maturase Location: 1987-2203 bp Feature: domain Description: GIIM Note: maturase Location: 1 987-2203 bp Feature: gene Location: 2759-3082 bp Feature: gene Location: 3183-4667 bp Feature: domain Description: COG4584 Location: 3186-4053 bp Feature: domain Description: COG4584 Location: 31 86-4053 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), COG4584 (Transposase )

Seq: PFFU01000094.1 Actinobacteria bacterium CG17_big_fil_post_rev_8_21_14_2_50_50_24 CG17_8_21_14_2.50_scaffold_8274_c, whole genome shotgun sequence (6302 bp)
Overview 1 RT 1: 399-5533 bp Neighborhood of RT #1 [399, 5589] CRISPR_Cas6 Cas1_I-II-III RVT-CRISPR cas4 cas1_CYANO CRISPR_Cas2 Feature: gene Location: 399-1352 bp Feature: domain Description: CRISPR_Cas6 Location: 975-1341 bp Feature: domain Description: CRISPR_Cas6 Location: 975-1341 bp Feature: gene Location: 1374-2381 bp Feature: domain Description: Cas1_I-II-III Location: 1386-2343 bp Feature: domain Description: Cas1_I-II-III Location: 1386-2 343 bp Feature: gene Location: 2558-4258 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2789-3392 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2 789-3392 bp Feature: domain Description: cas4 Location: 3662-4196 bp Feature: domain Description: cas4 Location: 3662 -4196 bp Feature: gene Location: 4319-5311 bp Feature: domain Description: cas1_CYANO Location: 4328-5306 bp Feature: domain Description: cas1_CYANO Location: 432 8-5306 bp Feature: gene Location: 5317-5589 bp Feature: domain Description: CRISPR_Cas2 Location: 5320-5533 bp Feature: domain Description: CRISPR_Cas2 Location: 532 0-5533 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CRISPR_Cas6 (pfam10040), Cas1_I-II-III (cl00656), RVT-CRISPR, cas4 (TIGR00372), cas1_CYANO (TIGR04093), CRISPR_Cas2 (pfam09827)