myRT

myRT report for GCA_002783505.1_ASM278350v1

Download annotations/find similar RTs

Seq: PFGL01000066.1 Shewanella sp. CG12_big_fil_rev_8_21_14_0_65_47_15 CG12_8_21_14_0.65_scaffold_131_c, whole genome shotgun sequence (88957 bp)
Overview 1 RT 1: 86311-88244 bp Neighborhood of RT #1 [86311, 88753] SLATT_5 RVT-UG17 Feature: gene Location: 86311-86544 bp Feature: gene Location: 86806-87432 bp Feature: domain Description: SLATT_5 Location: 86812-87394 bp Feature: domain Description: SLATT_5 Location: 8681 2-87394 bp Feature: gene Location: 87410-88753 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 87638-88244 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 87638-88244 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17

Seq: PFGL01000019.1 Shewanella sp. CG12_big_fil_rev_8_21_14_0_65_47_15 CG12_8_21_14_0.65_scaffold_1_c, whole genome shotgun sequence (263249 bp)
Overview 1 RT 1: 116984-123876 bp Neighborhood of RT #1 [116984, 124634] AAA_21 AAA_21 RVT-Retrons VCBS VCBS VCBS VCBS Feature: gene Location: 116984-117286 bp Feature: gene Location: 117608-118978 bp Feature: domain Description: AAA_21 Location: 117692-117878 bp Feature: domain Description: AAA_2 1 Location: 117692 -117878 bp Feature: domain Description: AAA_21 Location: 118085-118364 bp Feature: domain Description: AAA_2 1 Location: 118085-118364 bp Feature: gene Location: 118980-119966 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 119094-119646 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 119094-119646 bp Feature: gene Location: 120410-120571 bp Feature: gene Location: 121035-124634 bp Feature: domain Description: VCBS Location: 122628-122715 bp Feature: domain Description: VCBS Location: 12 2 62 8-12 2 715 bp Feature: domain Description: VCBS Location: 122838-122997 bp Feature: domain Description: VCBS Location: 12 2 838-12 2 997 bp Feature: domain Description: VCBS Location: 123246-123408 bp Feature: domain Description: VCBS Location: 12 32 46-12 3408 bp Feature: domain Description: VCBS Location: 123744-123876 bp Feature: domain Description: VCBS Location: 12 3744-12 3876 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_21 (pfam13304), RVT-Retrons, VCBS (pfam13517)

Seq: PFGL01000063.1 Shewanella sp. CG12_big_fil_rev_8_21_14_0_65_47_15 CG12_8_21_14_0.65_scaffold_56_c, whole genome shotgun sequence (277181 bp)
Overview 1 RT 1: 113-2484 bp Neighborhood of RT #1 [113, 2484] RVT_N RVT-GII GIIM Feature: gene Location: 113-1582 bp Feature: domain Description: RVT_N Location: 158-401 bp Feature: domain Description: RVT_N Location: 158-401 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 446-1073 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 446-1073 bp Feature: domain Description: GIIM Note: maturase Location: 1133-1358 bp Feature: domain Description: GIIM Note: maturase Location: 113 3 -13 58 bp Feature: gene Location: 1571-1972 bp Feature: gene Location: 2305-2484 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)