myRT

myRT report for GCA_002785245.1_ASM278524v1

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Seq: PFLU01000112.1 Nitrospirae bacterium CG_4_10_14_0_8_um_filter_41_23 CG_4_10_14_0.8_um_filter_scaffold_1930_c, whole genome shotgun sequence (24078 bp)
Overview 1 RT 1: 18917-22253 bp Neighborhood of RT #1 [18917, 22253] AbiEii Cas2_I_II_III RVT-CRISPR RVT_1 Cas_Cas1 Feature: gene Location: 18917-19567 bp Feature: domain Description: AbiEii Location: 18977-19406 bp Feature: domain Description: AbiEii Location: 1 8977-1 9406 bp Feature: gene Location: 20063-20398 bp Feature: domain Description: Cas2_I_II_III Location: 20135-20357 bp Feature: domain Description: Cas2_I_II_III Location: 201 35-20357 bp Feature: gene Location: 20367-21389 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 20685-20853 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 20685-20853 bp Feature: domain Description: RVT_1 Location: 20880-21072 bp Feature: domain Description: RVT_1 Location: 20880-21 072 bp Feature: domain Description: Cas_Cas1 Location: 21102-21369 bp Feature: domain Description: Cas_Cas1 Location: 21 1 02-21 369 bp Feature: gene Location: 21411-22058 bp Feature: gene Location: 22074-22253 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), Cas2_I_II_III (cl11442), RVT-CRISPR, RVT_1 (pfam00078), Cas_Cas1 (pfam01867)

Seq: PFLU01000017.1 Nitrospirae bacterium CG_4_10_14_0_8_um_filter_41_23 CG_4_10_14_0.8_um_filter_scaffold_333_c, whole genome shotgun sequence (42428 bp)
Overview 1 RT 1: 37500-40897 bp Neighborhood of RT #1 [37500, 40926] dcd PRK00230 RVT-GII KOG4768 DUF2442 Feature: gene Location: 37500-38048 bp Feature: domain Description: dcd Location: 37503-38043 bp Feature: domain Description: dcd Location: 37503-38043 bp Feature: gene Location: 38068-38802 bp Feature: domain Description: PRK00230 Location: 38098-38791 bp Feature: domain Description: PRK002 30 Location: 38098-38791 bp Feature: gene Location: 39040-40083 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39325-39628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3932 5-3962 8 bp Feature: domain Description: KOG4768 Location: 39820-39907 bp Feature: domain Description: KOG4768 Location: 3982 0-39907 bp Feature: gene Location: 40366-40548 bp Feature: gene Location: 40654-40926 bp Feature: domain Description: DUF2442 Location: 40690-40897 bp Feature: domain Description: DUF2 442 Location: 40690-40897 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dcd (PRK00416), PRK00230 (orotidine-5'-phosphate decarboxylase), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), DUF2442 (pfam10387)

Seq: PFLU01000106.1 Nitrospirae bacterium CG_4_10_14_0_8_um_filter_41_23 CG_4_10_14_0.8_um_filter_scaffold_3844_c, whole genome shotgun sequence (10805 bp)
Overview 1 RT 1: 3-7357 bp Neighborhood of RT #1 [3, 7365] COG0610 RVT-UG9 YtxH HflB Feature: gene Location: 3-2882 bp Feature: domain Description: COG0610 Location: 15-2820 bp Feature: domain Description: COG0610 Location: 15-2820 bp Feature: gene Location: 3136-4734 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3337-3943 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 3 3 3 7-3 943 bp Feature: gene Location: 4961-5308 bp Feature: domain Description: YtxH Location: 5000-5207 bp Feature: domain Description: YtxH Location: 5000-5207 bp Feature: gene Location: 5467-7365 bp Feature: domain Description: HflB Location: 5560-7357 bp Feature: domain Description: HflB Location: 5560-73 57 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), RVT-UG9, YtxH (pfam12732), HflB (COG0465)