myRT

myRT report for GCA_002786135.1_ASM278613v1

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Seq: PEQP01000075.1 Mycobacterium sp. isolate DS2.013 DS2_1000563_26640, whole genome shotgun sequence (26640 bp)
Overview 1 RT 1: 3203-10072 bp Neighborhood of RT #1 [3203, 10182] COG3653 AcrR RVT-CRISPR-like RnaI Feature: gene Location: 3203-4978 bp Feature: domain Description: COG3653 Location: 3209-4940 bp Feature: domain Description: COG3653 Location: 3209-4940 bp Feature: gene Location: 5018-5644 bp Feature: domain Description: AcrR Location: 5057-5552 bp Feature: domain Description: AcrR Location: 5057-5552 bp Feature: gene Location: 5805-7139 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 6048-6672 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 6048-6672 bp Feature: gene Location: 7129-9249 bp Feature: gene Location: 9406-10182 bp Feature: domain Description: RnaI Location: 9532-10072 bp Feature: domain Description: RnaI Location: 9532-1 0072 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3653 (N-acyl-D-aspartate/D-glutamate deacylase ), AcrR (COG1309), RVT-CRISPR, RnaI (COG3719)

Seq: PEQP01000064.1 Mycobacterium sp. isolate DS2.013 DS2_1002726_7013, whole genome shotgun sequence (7013 bp)
Overview 1 RT 1: 2895-6387 bp Neighborhood of RT #1 [2895, 6425] RVT-GII GIIM rve TetR_N TetR_C_35 Feature: gene Location: 2895-3110 bp Feature: gene Location: 3479-3637 bp Feature: gene Location: 3640-5088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3958-4645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3958-4645 bp Feature: domain Description: GIIM Note: maturase Location: 4720-4915 bp Feature: domain Description: GIIM Note: maturase Location: 472 0-4915 bp Feature: gene Location: 5223-5504 bp Feature: domain Description: rve Location: 5229-5349 bp Feature: domain Description: rve Location: 52 2 9-5349 bp Feature: gene Location: 5796-6425 bp Feature: domain Description: TetR_N Location: 5853-5985 bp Feature: domain Description: TetR_N Location: 5853-5985 bp Feature: domain Description: TetR_C_35 Location: 6054-6387 bp Feature: domain Description: TetR_C_35 Location: 6054-6387 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), rve (pfam00665), TetR_N (pfam00440), TetR_C_35 (pfam18556)

Seq: PEQP01000071.1 Mycobacterium sp. isolate DS2.013 DS2_1003567_5458, whole genome shotgun sequence (5458 bp)
Overview 1 RT 1: 2-5085 bp Neighborhood of RT #1 [2, 5085] Transposase_mut RVT_N RVT-GII GIIM DEDD_Tnp_IS110 Transposase_20 Feature: gene Location: 2-424 bp Feature: domain Description: Transposase_mut Location: 74-425 bp Feature: domain Description: Transposase_mut Location: 74-425 bp Feature: gene Location: 691-2493 bp Feature: RT Description: RVT_N Location: 736-973 bp Feature: RT Description: RVT_N Location: 73 6-973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1033-1693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103 3 -1693 bp Feature: domain Description: GIIM Note: maturase Location: 1762-1993 bp Feature: domain Description: GIIM Note: maturase Location: 1762-1993 bp Feature: gene Location: 3191-4435 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 3209-3680 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 3 209-3 680 bp Feature: domain Description: Transposase_20 Location: 4022-4274 bp Feature: domain Description: Transposase_20 Location: 4022-4274 bp Feature: gene Location: 4762-5085 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: PEQP01000207.1 Mycobacterium sp. isolate DS2.013 DS2_1006872_2918, whole genome shotgun sequence (2918 bp)
Overview 1 RT 1: 57-2756 bp Neighborhood of RT #1 [57, 2914] HTH_38 Tra8 RVT-GII GIIM Feature: gene Location: 57-923 bp Feature: domain Description: HTH_38 Location: 117-195 bp Feature: domain Description: HTH_38 Location: 117-195 bp Feature: domain Description: Tra8 Location: 291-861 bp Feature: domain Description: Tra8 Location: 291-861 bp Feature: gene Location: 1403-2914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1784-2468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1784 -24 68 bp Feature: domain Description: GIIM Note: maturase Location: 2543-2756 bp Feature: domain Description: GIIM Note: maturase Location: 254 3-2756 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_38 (pfam13936), Tra8 (COG2826)