myRT

myRT report for GCA_002786555.1_ASM278655v1

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Seq: CP022701.1 Bacillus coagulans strain LBSC chromosome (3635902 bp)
Overview 1 RT 1: 520335-525198 bp 2 RT 2: 1399311-1404225 bp 3 RT 3: 1513468-1518565 bp 4 RT 4: 1754685-1759958 bp 5 RT 5: 1902722-1907773 bp 6 RT 6: 2307784-2312691 bp 7 RT 7: 2419719-2424888 bp 8 RT 8: 2461496-2466555 bp 9 RT 9: 2992083-2996503 bp 10 RT 10: 3344564-3350779 bp Neighborhood of RT #1 [520335, 525248] RVT-GII GIIM YbbC DEDD_Tnp_IS110 COG3547 Neighborhood of RT #2 [1399311, 1404233] DUF2512 RVT-GII GIIM TPR tig Neighborhood of RT #3 [1513468, 1518570] AhpF RVT-GII GIIM PRK05803 PssA Neighborhood of RT #4 [1754685, 1759960] PRK05764 asnC RVT-GII GIIM DnaD Neighborhood of RT #5 [1902722, 1907778] AllC PucG RVT-GII GIIM RTP Neighborhood of RT #6 [2307784, 2312699] pyrC pyrB RVT-GII GIIM PyrR Neighborhood of RT #7 [2419719, 2424899] R_switched_YkoY RVT-GII GIIM prfC Neighborhood of RT #8 [2461496, 2466584] ChrA ChrA RVT-GII GIIM PRK03584 Neighborhood of RT #9 [2992083, 2996553] PnbA RVT-GII GIIM yflN-like_MBL-fold Neighborhood of RT #10 [3344564, 3350784] UPF0236 HMG-CoA-S_prok RVT-GII GIIM HMG-CoA_reductase_classII Feature: gene Location: 520335-520508 bp Feature: gene Location: 520548-520784 bp Feature: gene Location: 520860-522269 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 521208-521823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 521 208-521 823 bp Feature: domain Description: GIIM Note: maturase Location: 521877-522096 bp Feature: domain Description: GIIM Note: maturase Location: 521 877-522096 bp Feature: gene Location: 522345-523613 bp Feature: domain Description: YbbC Location: 522366-523602 bp Feature: domain Description: YbbC Location: 522366-523602 bp Feature: gene Location: 524025-525248 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 524040-524511 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 524040-52451 1 bp Feature: domain Description: COG3547 Location: 524745-525198 bp Feature: domain Description: COG3547 Location: 524745-5251 98 bp Feature: gene Location: 1399311-1399754 bp Feature: domain Description: DUF2512 Location: 1399314-1399719 bp Feature: domain Description: DUF251 2 Location: 1 39931 4-1 39971 9 bp Feature: gene Location: 1399895-1400131 bp Feature: gene Location: 1400207-1401616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1400555-1401170 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 400555-1 401 1 70 bp Feature: domain Description: GIIM Note: maturase Location: 1401224-1401443 bp Feature: domain Description: GIIM Note: maturase Location: 1 401 224-1 401 443 bp Feature: gene Location: 1401791-1402783 bp Feature: domain Description: TPR Location: 1401845-1402124 bp Feature: domain Description: TPR Location: 1 401 845-1 4021 24 bp Feature: gene Location: 1402947-1404233 bp Feature: domain Description: tig Location: 1402950-1404225 bp Feature: domain Description: tig Location: 1 402950-1 404225 bp Feature: gene Location: 1513468-1515024 bp Feature: domain Description: AhpF Location: 1513474-1515004 bp Feature: domain Description: AhpF Location: 1 51 3474-1 51 5004 bp Feature: gene Location: 1515168-1515404 bp Feature: gene Location: 1515480-1516889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1515828-1516443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 51 5828-1 51 6443 bp Feature: domain Description: GIIM Note: maturase Location: 1516497-1516716 bp Feature: domain Description: GIIM Note: maturase Location: 1 51 6497-1 51 671 6 bp Feature: gene Location: 1517141-1517968 bp Feature: domain Description: PRK05803 Location: 1517252-1517939 bp Feature: domain Description: PRK05803 Location: 1 51 7252-1 51 7939 bp Feature: gene Location: 1518007-1518570 bp Feature: domain Description: PssA Location: 1518076-1518565 bp Feature: domain Description: PssA Location: 1 51 8076-1 51 8565 bp Feature: gene Location: 1754685-1755872 bp Feature: domain Description: PRK05764 Location: 1754688-1755858 bp Feature: domain Description: PRK05764 Location: 1 754688-1 755858 bp Feature: gene Location: 1755929-1757260 bp Feature: domain Description: asnC Location: 1755980-1757255 bp Feature: domain Description: asnC Location: 1 755980-1 757255 bp Feature: gene Location: 1757346-1758755 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1757694-1758309 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 757694-1 758309 bp Feature: domain Description: GIIM Note: maturase Location: 1758363-1758582 bp Feature: domain Description: GIIM Note: maturase Location: 1 758363-1 758582 bp Feature: gene Location: 1758831-1759067 bp Feature: gene Location: 1759007-1759960 bp Feature: domain Description: DnaD Location: 1759274-1759958 bp Feature: domain Description: DnaD Location: 1 759274-1 759958 bp Feature: gene Location: 1902722-1903984 bp Feature: domain Description: AllC Location: 1902782-1903979 bp Feature: domain Description: AllC Location: 1 902782-1 903979 bp Feature: gene Location: 1903985-1905265 bp Feature: domain Description: PucG Location: 1904039-1905233 bp Feature: domain Description: PucG Location: 1 904039-1 905233 bp Feature: gene Location: 1905528-1906937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1905876-1906491 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 905876-1 906491 bp Feature: domain Description: GIIM Note: maturase Location: 1906545-1906764 bp Feature: domain Description: GIIM Note: maturase Location: 1 906545-1 906764 bp Feature: gene Location: 1907013-1907249 bp Feature: gene Location: 1907377-1907778 bp Feature: domain Description: RTP Location: 1907434-1907773 bp Feature: domain Description: RTP Location: 1 907434-1 907773 bp Feature: gene Location: 2307784-2309070 bp Feature: domain Description: pyrC Location: 2307787-2309050 bp Feature: domain Description: pyrC Location: 2307787-2309050 bp Feature: gene Location: 2309130-2310029 bp Feature: domain Description: pyrB Location: 2309133-2310006 bp Feature: domain Description: pyrB Location: 23091 33-231 0006 bp Feature: gene Location: 2310264-2311673 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2310612-2311227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231 061 2-231 1 227 bp Feature: domain Description: GIIM Note: maturase Location: 2311281-2311500 bp Feature: domain Description: GIIM Note: maturase Location: 231 1 281 -231 1 500 bp Feature: gene Location: 2311749-2311985 bp Feature: gene Location: 2312157-2312699 bp Feature: domain Description: PyrR Location: 2312166-2312691 bp Feature: domain Description: PyrR Location: 231 21 66-231 2691 bp Feature: gene Location: 2419719-2420522 bp Feature: domain Description: R_switched_YkoY Location: 2419770-2420457 bp Feature: domain Description: R_switched_YkoY Location: 241 9770-2420457 bp Feature: gene Location: 2420847-2421317 bp Feature: gene Location: 2421480-2422889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2421828-2422443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2421 828-2422443 bp Feature: domain Description: GIIM Note: maturase Location: 2422497-2422716 bp Feature: domain Description: GIIM Note: maturase Location: 2422497-242271 6 bp Feature: gene Location: 2422965-2423201 bp Feature: gene Location: 2423331-2424899 bp Feature: domain Description: prfC Location: 2423346-2424888 bp Feature: domain Description: prfC Location: 2423346-2424888 bp Feature: gene Location: 2461496-2462095 bp Feature: domain Description: ChrA Location: 2461511-2462072 bp Feature: domain Description: ChrA Location: 2461 51 1 -2462072 bp Feature: gene Location: 2462092-2462631 bp Feature: domain Description: ChrA Location: 2462098-2462614 bp Feature: domain Description: ChrA Location: 2462098-246261 4 bp Feature: gene Location: 2462739-2464148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2463087-2463702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2463087-2463702 bp Feature: domain Description: GIIM Note: maturase Location: 2463756-2463975 bp Feature: domain Description: GIIM Note: maturase Location: 2463756-2463975 bp Feature: gene Location: 2464224-2464460 bp Feature: gene Location: 2464593-2466584 bp Feature: domain Description: PRK03584 Location: 2464617-2466555 bp Feature: domain Description: PRK03584 Location: 246461 7-2466555 bp Feature: gene Location: 2992083-2993561 bp Feature: domain Description: PnbA Location: 2992095-2993547 bp Feature: domain Description: PnbA Location: 2992095-2993547 bp Feature: gene Location: 2993671-2993886 bp Feature: gene Location: 2993954-2995363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2994302-2994917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2994302-299491 7 bp Feature: domain Description: GIIM Note: maturase Location: 2994971-2995190 bp Feature: domain Description: GIIM Note: maturase Location: 2994971 -29951 90 bp Feature: gene Location: 2995439-2995675 bp Feature: gene Location: 2995804-2996553 bp Feature: domain Description: yflN-like_MBL-fold Location: 2995861-2996503 bp Feature: domain Description: yflN-like_MBL-fold Location: 2995861 -2996503 bp Feature: gene Location: 3344564-3345979 bp Feature: domain Description: UPF0236 Location: 3344576-3345914 bp Feature: domain Description: UPF0236 Location: 3344576-334591 4 bp Feature: gene Location: 3346123-3347307 bp Feature: domain Description: HMG-CoA-S_prok Location: 3346132-3347278 bp Feature: domain Description: HMG-CoA-S_prok Location: 33461 32-3347278 bp Feature: gene Location: 3347375-3348784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3347723-3348338 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3347723-3348338 bp Feature: domain Description: GIIM Note: maturase Location: 3348392-3348608 bp Feature: domain Description: GIIM Note: maturase Location: 3348392-3348608 bp Feature: gene Location: 3348860-3349096 bp Feature: gene Location: 3349495-3350784 bp Feature: domain Description: HMG-CoA_reductase_classII Location: 3349516-3350779 bp Feature: domain Description: HMG-CoA_reductase_classII Location: 334951 6-3350779 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YbbC (COG3876), DEDD_Tnp_IS110 (pfam01548), COG3547 (Transposase ), DUF2512 (pfam10710), TPR (smart00028), tig (TIGR00115), AhpF (TIGR03140), PRK05803 (RNA polymerase sporulation sigma factor SigK)
PssA (COG1183), PRK05764 (aspartate aminotransferase; Provisional), asnC (PRK03932), DnaD (COG3935), AllC (TIGR03176), PucG (COG0075), RTP (pfam02334), pyrC (PRK09357), pyrB (PRK13814), PyrR (COG2065)
R_switched_YkoY (TIGR03716), prfC (TIGR00503), ChrA (COG2059), PRK03584 (acetoacetate--CoA ligase), PnbA (COG2272), yflN-like_MBL-fold (cd07721), UPF0236 (pfam06782), HMG-CoA-S_prok (TIGR01835), HMG-CoA_reductase_classII (cd00644)