myRT

myRT report for GCA_002787195.1_ASM278719v1

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Seq: PCWE01000052.1 Nitrospirae bacterium CG11_big_fil_rev_8_21_14_0_20_41_14 CG11_8_21_14_0.20_scaffold_1462_c, whole genome shotgun sequence (32955 bp)
Overview 1 RT 1: 3-6439 bp Neighborhood of RT #1 [3, 6447] COG0610 RVT-UG9 YtxH HflB Feature: gene Location: 3-1964 bp Feature: domain Description: COG0610 Location: 6-1902 bp Feature: domain Description: COG061 0 Location: 6-1 902 bp Feature: gene Location: 2218-3816 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 2419-3025 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 241 9-3025 bp Feature: gene Location: 4043-4390 bp Feature: domain Description: YtxH Location: 4082-4289 bp Feature: domain Description: YtxH Location: 4082-4289 bp Feature: gene Location: 4549-6447 bp Feature: domain Description: HflB Location: 4642-6439 bp Feature: domain Description: HflB Location: 4642-6439 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), RVT-UG9, YtxH (pfam12732), HflB (COG0465)

Seq: PCWE01000191.1 Nitrospirae bacterium CG11_big_fil_rev_8_21_14_0_20_41_14 CG11_8_21_14_0.20_scaffold_2095_c, whole genome shotgun sequence (25016 bp)
Overview 1 RT 1: 1617-4792 bp Neighborhood of RT #1 [1617, 4953] RVT-CRISPR RVT_1 Cas_Cas1 Cas2_I_II_III AbiEii Feature: gene Location: 1617-1796 bp Feature: gene Location: 1812-2459 bp Feature: gene Location: 2481-3503 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2799-2967 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2 799-2 967 bp Feature: domain Description: RVT_1 Location: 2994-3186 bp Feature: domain Description: RVT_1 Location: 2 994-3186 bp Feature: domain Description: Cas_Cas1 Location: 3216-3483 bp Feature: domain Description: Cas_Cas1 Location: 32 16-3483 bp Feature: gene Location: 3472-3807 bp Feature: domain Description: Cas2_I_II_III Location: 3544-3766 bp Feature: domain Description: Cas2 _I_II_III Location: 3544-3766 bp Feature: gene Location: 4303-4953 bp Feature: domain Description: AbiEii Location: 4363-4792 bp Feature: domain Description: AbiEii Location: 4363-4792 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, RVT_1 (pfam00078), Cas_Cas1 (pfam01867), Cas2_I_II_III (cl11442), AbiEii (pfam08843)

Seq: PCWE01000019.1 Nitrospirae bacterium CG11_big_fil_rev_8_21_14_0_20_41_14 CG11_8_21_14_0.20_scaffold_4631_c, whole genome shotgun sequence (9644 bp)
Overview 1 RT 1: 3-8275 bp Neighborhood of RT #1 [3, 8275] DUF302 YeeA N6_Mtase TaqI_C group_II_RT_mat RVT-UG19 Feature: gene Location: 3-272 bp Feature: domain Description: DUF302 Location: 9-267 bp Feature: domain Description: DUF3 02 Location: 9-267 bp Feature: gene Location: 535-4617 bp Feature: domain Description: YeeA Location: 1942-2602 bp Feature: domain Description: YeeA Location: 1942-2602 bp Feature: domain Description: N6_Mtase Location: 2965-3373 bp Feature: domain Description: N6_Mtase Location: 2965-3 3 73 bp Feature: domain Description: TaqI_C Location: 3634-4090 bp Feature: domain Description: TaqI_C Location: 3 63 4-4090 bp Feature: gene Location: 4665-6560 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4788-5043 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 4788-5043 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 5124-5616 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 5124-5616 bp Feature: gene Location: 6784-8100 bp Feature: gene Location: 8087-8275 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF302 (pfam03625), YeeA (COG1002), N6_Mtase (pfam02384), TaqI_C (pfam12950), group_II_RT_mat (TIGR04416), RVT-UG19

Seq: PCWE01000194.1 Nitrospirae bacterium CG11_big_fil_rev_8_21_14_0_20_41_14 CG11_8_21_14_0.20_scaffold_780_c, whole genome shotgun sequence (42282 bp)
Overview 1 RT 1: 37344-40741 bp Neighborhood of RT #1 [37344, 40770] dcd PRK00230 RVT-GII KOG4768 DUF2442 Feature: gene Location: 37344-37892 bp Feature: domain Description: dcd Location: 37347-37887 bp Feature: domain Description: dcd Location: 3734 7-37887 bp Feature: gene Location: 37912-38646 bp Feature: domain Description: PRK00230 Location: 37942-38635 bp Feature: domain Description: PRK00230 Location: 3794 2-38635 bp Feature: gene Location: 38884-39927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39169-39472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39169-394 72 bp Feature: domain Description: KOG4768 Location: 39664-39751 bp Feature: domain Description: KOG4 768 Location: 39664 -39751 bp Feature: gene Location: 40210-40392 bp Feature: gene Location: 40498-40770 bp Feature: domain Description: DUF2442 Location: 40534-40741 bp Feature: domain Description: DUF24 4 2 Location: 4 0534 -4 074 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dcd (PRK00416), PRK00230 (orotidine-5'-phosphate decarboxylase), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), DUF2442 (pfam10387)