myRT

myRT report for GCA_002787675.1_ASM278767v1

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Seq: MRAF01000001.1 Pediococcus damnosus strain P58 Scaffold_1, whole genome shotgun sequence (2087995 bp)
Overview 1 RT 1: 138500-142847 bp 2 RT 2: 717670-721001 bp 3 RT 3: 1038141-1045377 bp 4 RT 4: 1638488-1642083 bp 5 RT 5: 1687186-1691054 bp Neighborhood of RT #1 [138500, 142882] LysR PRK05427 group_II_RT_mat RVT-GII GIIM DDE_Tnp_IS66 DDE_Tnp_IS66_C Neighborhood of RT #2 [717670, 721001] RVT-GII GIIM Neighborhood of RT #3 [1038141, 1045382] AzoR GanB RVT-GII GIIM RVT-GII GIIM arb Neighborhood of RT #4 [1638488, 1642127] DEDD_Tnp_IS110 Transposase_20 RVT-GII GIIM GMPK Neighborhood of RT #5 [1687186, 1691062] RVT-GII RVT-GII GIIM ManX PRK09855 Feature: gene Location: 138500-139465 bp Feature: domain Description: LysR Location: 138536-139418 bp Feature: domain Description: LysR Location: 1 38536-1 3941 8 bp Feature: gene Location: 139496-140422 bp Feature: domain Description: PRK05427 Location: 139499-140417 bp Feature: domain Description: PRK05427 Location: 1 39499-1 4041 7 bp Feature: gene Location: 140537-141442 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 140699-140777 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1 40699-1 40777 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 140780-140996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 40780-1 40996 bp Feature: domain Description: GIIM Note: maturase Location: 141053-141278 bp Feature: domain Description: GIIM Note: maturase Location: 1 41 053-1 41 278 bp Feature: gene Location: 141538-141774 bp Feature: gene Location: 142058-142882 bp Feature: domain Description: DDE_Tnp_IS66 Location: 142064-142706 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 42064-1 42706 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 142727-142847 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 42727-1 42847 bp Feature: gene Location: 717670-718035 bp Feature: gene Location: 718051-719562 bp Feature: gene Location: 719823-720458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 719829-720012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 9829-72001 2 bp Feature: domain Description: GIIM Note: maturase Location: 720069-720294 bp Feature: domain Description: GIIM Note: maturase Location: 720069-720294 bp Feature: gene Location: 720466-720669 bp Feature: gene Location: 720765-721001 bp Feature: gene Location: 1038141-1038788 bp Feature: domain Description: AzoR Location: 1038144-1038780 bp Feature: domain Description: AzoR Location: 1 0381 44-1 038780 bp Feature: gene Location: 1038893-1040791 bp Feature: domain Description: GanB Location: 1039046-1040267 bp Feature: domain Description: GanB Location: 1 039046-1 040267 bp Feature: gene Location: 1040901-1041557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1040904-1041111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 040904-1 041 1 1 1 bp Feature: domain Description: GIIM Note: maturase Location: 1041168-1041393 bp Feature: domain Description: GIIM Note: maturase Location: 1 041 1 68-1 041 393 bp Feature: gene Location: 1041665-1043059 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1041995-1042613 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 041 995-1 04261 3 bp Feature: domain Description: GIIM Note: maturase Location: 1042670-1042895 bp Feature: domain Description: GIIM Note: maturase Location: 1 042670-1 042895 bp Feature: gene Location: 1043155-1043391 bp Feature: gene Location: 1043940-1045382 bp Feature: domain Description: arb Location: 1043949-1045377 bp Feature: domain Description: arb Location: 1 043949-1 045377 bp Feature: gene Location: 1638488-1638724 bp Feature: gene Location: 1639004-1640263 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 1639076-1639523 bp Feature: domain Description: DEDD_Tnp_IS1 1 0 Location: 1 639076-1 639523 bp Feature: domain Description: Transposase_20 Location: 1639862-1640081 bp Feature: domain Description: Transposase_20 Location: 1 639862-1 640081 bp Feature: gene Location: 1640190-1641029 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1640394-1640583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 640394-1 640583 bp Feature: domain Description: GIIM Note: maturase Location: 1640640-1640865 bp Feature: domain Description: GIIM Note: maturase Location: 1 640640-1 640865 bp Feature: gene Location: 1641121-1641300 bp Feature: gene Location: 1641558-1642127 bp Feature: domain Description: GMPK Location: 1641570-1642083 bp Feature: domain Description: GMPK Location: 1 641 570-1 642083 bp Feature: gene Location: 1687186-1687695 bp Feature: gene Location: 1687844-1688080 bp Feature: gene Location: 1688176-1688718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1688506-1688698 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 688506-1 688698 bp Feature: gene Location: 1688742-1689437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1688781-1688991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 688781 -1 688991 bp Feature: domain Description: GIIM Note: maturase Location: 1689048-1689273 bp Feature: domain Description: GIIM Note: maturase Location: 1 689048-1 689273 bp Feature: gene Location: 1689837-1690280 bp Feature: domain Description: ManX Location: 1689852-1690260 bp Feature: domain Description: ManX Location: 1 689852-1 690260 bp Feature: gene Location: 1690307-1691062 bp Feature: domain Description: PRK09855 Location: 1690310-1691054 bp Feature: domain Description: PRK09855 Location: 1 69031 0-1 691 054 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysR (COG0583), PRK05427 (putative manganese-dependent inorganic pyrophosphatase; Provisional), group_II_RT_mat (TIGR04416), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), AzoR (COG1182), GanB (COG3867), arb (PRK09593)
DEDD_Tnp_IS110 (pfam01548), Transposase_20 (pfam02371), GMPK (cd00071), ManX (COG2893), PRK09855 (PTS N-acetylgalactosamine transporter subunit IID)