myRT

myRT report for GCA_002789655.1_ASM278965v1

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Seq: PFTP01000080.1 Actinobacteria bacterium CG_4_9_14_3_um_filter_50_75 CG_4_9_14_3_um_filter_150_scaffold_18437_c, whole genome shotgun sequence (5741 bp)
Overview 1 RT 1: 147-5281 bp Neighborhood of RT #1 [147, 5337] CRISPR_Cas6 Cas1_I-II-III RVT-CRISPR cas4 cas1_CYANO CRISPR_Cas2 Feature: gene Location: 147-1100 bp Feature: domain Description: CRISPR_Cas6 Location: 723-1089 bp Feature: domain Description: CRISPR_Cas6 Location: 723-1 089 bp Feature: gene Location: 1122-2129 bp Feature: domain Description: Cas1_I-II-III Location: 1134-2091 bp Feature: domain Description: Cas1 _I-II-III Location: 1 1 34-2091 bp Feature: gene Location: 2306-4006 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2537-3140 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2537-31 40 bp Feature: domain Description: cas4 Location: 3410-3944 bp Feature: domain Description: cas4 Location: 341 0-3944 bp Feature: gene Location: 4067-5059 bp Feature: domain Description: cas1_CYANO Location: 4076-5054 bp Feature: domain Description: cas1 _CYANO Location: 4076-5054 bp Feature: gene Location: 5065-5337 bp Feature: domain Description: CRISPR_Cas2 Location: 5068-5281 bp Feature: domain Description: CRISPR_Cas2 Location: 5068-5281 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CRISPR_Cas6 (pfam10040), Cas1_I-II-III (cl00656), RVT-CRISPR, cas4 (TIGR00372), cas1_CYANO (TIGR04093), CRISPR_Cas2 (pfam09827)

Seq: PFTP01000106.1 Actinobacteria bacterium CG_4_9_14_3_um_filter_50_75 CG_4_9_14_3_um_filter_150_scaffold_2241_c, whole genome shotgun sequence (22266 bp)
Overview 1 RT 1: 426-3752 bp Neighborhood of RT #1 [426, 4366] RVT-GII GIIM PRK09183 COG4584 Feature: gene Location: 426-677 bp Feature: gene Location: 820-1986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 928-1543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 92 8-1543 bp Feature: domain Description: GIIM Note: maturase Location: 1597-1813 bp Feature: domain Description: GIIM Note: maturase Location: 1597-1813 bp Feature: gene Location: 2158-2880 bp Feature: domain Description: PRK09183 Location: 2224-2866 bp Feature: domain Description: PRK09183 Location: 2 2 2 4-2 866 bp Feature: gene Location: 2882-4366 bp Feature: domain Description: COG4584 Location: 2885-3752 bp Feature: domain Description: COG4584 Location: 2 885-3752 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK09183 (transposase/IS protein; Provisional), COG4584 (Transposase )