myRT

myRT report for GCA_002789955.1_ASM278995v1

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Seq: PFUG01000414.1 Deltaproteobacteria bacterium CG_4_9_14_3_um_filter_63_12 CG_4_9_14_3_um_filter_150_scaffold_10151_c, whole genome shotgun sequence (17126 bp)
Overview 1 RT 1: 2242-16084 bp Neighborhood of RT #1 [2242, 17124] RVT-Retrons ZU5 YD_repeat_2x RHS_repeat Feature: gene Location: 2242-4584 bp Feature: gene Location: 5019-6890 bp Feature: gene Location: 7170-8462 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7623-8247 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 7623-8247 bp Feature: gene Location: 8591-9424 bp Feature: gene Location: 10195-17124 bp Feature: domain Description: ZU5 Location: 10351-10549 bp Feature: domain Description: ZU5 Location: 1 0351 -1 0549 bp Feature: domain Description: YD_repeat_2x Location: 13780-13885 bp Feature: domain Description: YD_repeat_2x Location: 1 3780-1 3885 bp Feature: domain Description: RHS_repeat Location: 16009-16084 bp Feature: domain Description: RHS_repeat Location: 1 6009-1 6084 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: PFUG01000126.1 Deltaproteobacteria bacterium CG_4_9_14_3_um_filter_63_12 CG_4_9_14_3_um_filter_150_scaffold_17064_c, whole genome shotgun sequence (5933 bp)
Overview 1 RT 1: 867-4579 bp Neighborhood of RT #1 [867, 4662] WG_beta_rep WG_beta_rep WG_beta_rep WG_beta_rep WG_beta_rep WG_beta_rep WG_beta_rep RVT-DGRs Avd_like HRDC Feature: gene Location: 867-1346 bp Feature: gene Location: 1363-2730 bp Feature: domain Description: WG_beta_rep Location: 1516-1609 bp Feature: domain Description: WG_beta_rep Location: 1516-1609 bp Feature: domain Description: WG_beta_rep Location: 1627-1675 bp Feature: domain Description: WG_beta_rep Location: 162 7-1675 bp Feature: domain Description: WG_beta_rep Location: 1732-1810 bp Feature: domain Description: WG_beta_rep Location: 1732 -1810 bp Feature: domain Description: WG_beta_rep Location: 1831-1918 bp Feature: domain Description: WG_beta_rep Location: 1831-1918 bp Feature: domain Description: WG_beta_rep Location: 1969-2053 bp Feature: domain Description: WG_beta_rep Location: 1969-2 053 bp Feature: domain Description: WG_beta_rep Location: 2122-2212 bp Feature: domain Description: WG_beta_rep Location: 2 12 2 -2 2 12 bp Feature: domain Description: WG_beta_rep Location: 2248-2320 bp Feature: domain Description: WG_beta_rep Location: 2 2 48-2 32 0 bp Feature: gene Location: 3173-3652 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3176-3440 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3176-3440 bp Feature: gene Location: 3762-4136 bp Feature: domain Description: Avd_like Location: 3786-4098 bp Feature: domain Description: Avd_like Location: 3786-4098 bp Feature: gene Location: 4129-4662 bp Feature: domain Description: HRDC Location: 4378-4579 bp Feature: domain Description: HRDC Location: 4378-4579 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WG_beta_rep (pfam14903), RVT-DGRs, Avd_like (cd16376), HRDC (smart00341)

Seq: PFUG01000614.1 Deltaproteobacteria bacterium CG_4_9_14_3_um_filter_63_12 CG_4_9_14_3_um_filter_150_scaffold_28468_c, whole genome shotgun sequence (4010 bp)
Overview 1 RT 1: 2-4009 bp Neighborhood of RT #1 [2, 4009] pfam03781 HRDC RVT-DGRs Feature: gene Location: 2-628 bp Feature: domain Description: pfam03781 Location: 5-614 bp Feature: domain Description: pfam03 781 Location: 5-614 bp Feature: gene Location: 887-1642 bp Feature: domain Description: HRDC Location: 1163-1352 bp Feature: domain Description: HRDC Location: 1163 -13 52 bp Feature: gene Location: 1639-2748 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1936-2542 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 193 6-2542 bp Feature: gene Location: 3869-4009 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1), HRDC (smart00341)

Seq: PFUG01000673.1 Deltaproteobacteria bacterium CG_4_9_14_3_um_filter_63_12 CG_4_9_14_3_um_filter_150_scaffold_8182_c, whole genome shotgun sequence (9608 bp)
Overview 1 RT 1: 266-7788 bp Neighborhood of RT #1 [266, 8027] LNS2 HEAT_2 HEAT_2 Aldo_ket_red RVT-Retrons YfmG SDR_a5 Feature: gene Location: 266-1540 bp Feature: domain Description: LNS2 Location: 1001-1436 bp Feature: domain Description: LNS2 Location: 1001-14 36 bp Feature: gene Location: 1791-3776 bp Feature: domain Description: HEAT_2 Location: 2064-2316 bp Feature: domain Description: HEAT_2 Location: 2064 -2316 bp Feature: domain Description: HEAT_2 Location: 2442-2682 bp Feature: domain Description: HEAT_2 Location: 24 4 2-2682 bp Feature: domain Description: Aldo_ket_red Location: 3156-3717 bp Feature: domain Description: Aldo_ket_red Location: 3156-3717 bp Feature: gene Location: 4208-5689 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4826-5450 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4 826-54 50 bp Feature: gene Location: 5682-6569 bp Feature: domain Description: YfmG Location: 5913-6558 bp Feature: domain Description: YfmG Location: 5913-6558 bp Feature: gene Location: 7029-8027 bp Feature: domain Description: SDR_a5 Location: 7173-7788 bp Feature: domain Description: SDR_a5 Location: 7173-7788 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, YfmG (COG1262), SDR_a5 (cd05243)

Seq: PFUG01000078.1 Deltaproteobacteria bacterium CG_4_9_14_3_um_filter_63_12 CG_4_9_14_3_um_filter_150_scaffold_9467_c, whole genome shotgun sequence (9680 bp)
Overview 1 RT 1: 392-4668 bp Neighborhood of RT #1 [392, 4668] RVT-GII GIIM PRK00331 PRK00331 PRK00331 Feature: gene Location: 392-1216 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 437-866 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 437-866 bp Feature: domain Description: GIIM Note: maturase Location: 941-1148 bp Feature: domain Description: GIIM Note: maturase Location: 941-1148 bp Feature: gene Location: 1399-4119 bp Feature: domain Description: PRK00331 Location: 1402-2326 bp Feature: domain Description: PRK00331 Location: 1402-2326 bp Feature: domain Description: PRK00331 Location: 2800-3502 bp Feature: domain Description: PRK00331 Location: 2800-35 02 bp Feature: domain Description: PRK00331 Location: 3760-4117 bp Feature: domain Description: PRK00331 Location: 3760-4117 bp Feature: gene Location: 4393-4668 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00331 (isomerizing glutamine--fructose-6-phosphate transaminase), RVT-GII, GIIM (pfam08388)