myRT

myRT report for GCA_002790775.1_ASM279077v1

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Seq: PFVU01000021.1 Nitrospirae bacterium CG_4_9_14_3_um_filter_41_27 CG_4_9_14_3_um_filter_150_scaffold_3214_c, whole genome shotgun sequence (35869 bp)
Overview 1 RT 1: 16289-23923 bp Neighborhood of RT #1 [16289, 23931] DUF433 COG0610 RVT-UG9 YtxH HflB Feature: gene Location: 16289-16516 bp Feature: domain Description: DUF433 Location: 16310-16475 bp Feature: domain Description: DUF433 Location: 1 631 0-1 6475 bp Feature: gene Location: 16563-19448 bp Feature: domain Description: COG0610 Location: 16581-19386 bp Feature: domain Description: COG061 0 Location: 1 6581 -1 9386 bp Feature: gene Location: 19702-21300 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 19903-20509 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 1 9903-20509 bp Feature: gene Location: 21527-21874 bp Feature: domain Description: YtxH Location: 21566-21773 bp Feature: domain Description: YtxH Location: 21 566-21 773 bp Feature: gene Location: 22033-23931 bp Feature: domain Description: HflB Location: 22126-23923 bp Feature: domain Description: HflB Location: 221 26-23923 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF433 (pfam04255), COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), RVT-UG9, YtxH (pfam12732), HflB (COG0465)

Seq: PFVU01000031.1 Nitrospirae bacterium CG_4_9_14_3_um_filter_41_27 CG_4_9_14_3_um_filter_150_scaffold_3364_c, whole genome shotgun sequence (23881 bp)
Overview 1 RT 1: 18927-22263 bp Neighborhood of RT #1 [18927, 22263] AbiEii Cas2_I_II_III RVT-CRISPR RVT_1 Cas_Cas1 Feature: gene Location: 18927-19577 bp Feature: domain Description: AbiEii Location: 18987-19416 bp Feature: domain Description: AbiEii Location: 18987-19416 bp Feature: gene Location: 20073-20408 bp Feature: domain Description: Cas2_I_II_III Location: 20145-20367 bp Feature: domain Description: Cas2 _I_II_III Location: 2 0145-2 0367 bp Feature: gene Location: 20377-21399 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 20695-20863 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2 0695-2 0863 bp Feature: domain Description: RVT_1 Location: 20890-21082 bp Feature: domain Description: RVT_1 Location: 2 0890-2 1082 bp Feature: domain Description: Cas_Cas1 Location: 21112-21379 bp Feature: domain Description: Cas_Cas1 Location: 2 1112 -2 1379 bp Feature: gene Location: 21421-22068 bp Feature: gene Location: 22084-22263 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), Cas2_I_II_III (cl11442), RVT-CRISPR, RVT_1 (pfam00078), Cas_Cas1 (pfam01867)

Seq: PFVU01000131.1 Nitrospirae bacterium CG_4_9_14_3_um_filter_41_27 CG_4_9_14_3_um_filter_150_scaffold_3369_c, whole genome shotgun sequence (42382 bp)
Overview 1 RT 1: 37487-40884 bp Neighborhood of RT #1 [37487, 40913] dcd PRK00230 RVT-GII KOG4768 DUF2442 Feature: gene Location: 37487-38035 bp Feature: domain Description: dcd Location: 37490-38030 bp Feature: domain Description: dcd Location: 3 7490-3 803 0 bp Feature: gene Location: 38055-38789 bp Feature: domain Description: PRK00230 Location: 38085-38778 bp Feature: domain Description: PRK0023 0 Location: 3 8085-3 8778 bp Feature: gene Location: 39027-40070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39312-39615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 93 12-3 9615 bp Feature: domain Description: KOG4768 Location: 39807-39894 bp Feature: domain Description: KOG4768 Location: 3 9807-3 9894 bp Feature: gene Location: 40353-40535 bp Feature: gene Location: 40641-40913 bp Feature: domain Description: DUF2442 Location: 40677-40884 bp Feature: domain Description: DUF2442 Location: 40677-40884 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dcd (PRK00416), PRK00230 (orotidine-5'-phosphate decarboxylase), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), DUF2442 (pfam10387)

Seq: PFVU01000044.1 Nitrospirae bacterium CG_4_9_14_3_um_filter_41_27 CG_4_9_14_3_um_filter_150_scaffold_7587_c, whole genome shotgun sequence (21343 bp)
Overview 1 RT 1: 11476-19865 bp Neighborhood of RT #1 [11476, 19865] DUF302 YeeA N6_Mtase TaqI_C group_II_RT_mat RVT-UG19 Feature: gene Location: 11476-11862 bp Feature: domain Description: DUF302 Location: 11494-11857 bp Feature: domain Description: DUF302 Location: 114 94 -11857 bp Feature: gene Location: 12125-16207 bp Feature: domain Description: YeeA Location: 13532-14192 bp Feature: domain Description: YeeA Location: 13532-14 192 bp Feature: domain Description: N6_Mtase Location: 14555-14963 bp Feature: domain Description: N6_Mtase Location: 14 555-14 963 bp Feature: domain Description: TaqI_C Location: 15224-15680 bp Feature: domain Description: TaqI_C Location: 15224 -15680 bp Feature: gene Location: 16255-18150 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 16378-16633 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 16378-16633 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 16714-17206 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 16714 -17206 bp Feature: gene Location: 18374-19690 bp Feature: gene Location: 19677-19865 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF302 (pfam03625), YeeA (COG1002), N6_Mtase (pfam02384), TaqI_C (pfam12950), group_II_RT_mat (TIGR04416), RVT-UG19