myRT

myRT report for GCA_002791545.1_ASM279154v1

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Seq: PFXG01000033.1 Zetaproteobacteria bacterium CG_4_9_14_3_um_filter_49_83 CG_4_9_14_3_um_filter_150_scaffold_197_c, whole genome shotgun sequence (74847 bp)
Overview 1 RT 1: 61713-67162 bp Neighborhood of RT #1 [61713, 67162] CRISPR_Cas2 CRISPR_Cas6 RVT-CRISPR Cas1_I-II-III DUF1887 Feature: gene Location: 61713-61877 bp Feature: gene Location: 62657-62935 bp Feature: domain Description: CRISPR_Cas2 Location: 62672-62876 bp Feature: domain Description: CRISPR_Cas2 Location: 62672-62876 bp Feature: gene Location: 62932-65832 bp Feature: domain Description: CRISPR_Cas6 Location: 63643-63802 bp Feature: domain Description: CRISPR_Cas6 Location: 63643-63802 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 64048-64642 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 64048-64642 bp Feature: domain Description: Cas1_I-II-III Location: 64888-65773 bp Feature: domain Description: Cas1 _I-II-III Location: 64888-65773 bp Feature: gene Location: 65822-66970 bp Feature: domain Description: DUF1887 Location: 65837-66902 bp Feature: domain Description: DUF1 887 Location: 65837-66902 bp Feature: gene Location: 66482-67162 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CRISPR_Cas2 (pfam09827), CRISPR_Cas6 (pfam10040), RVT-CRISPR, Cas1_I-II-III (cl00656), DUF1887 (pfam09002)

Seq: PFXG01000051.1 Zetaproteobacteria bacterium CG_4_9_14_3_um_filter_49_83 CG_4_9_14_3_um_filter_150_scaffold_5507_c, whole genome shotgun sequence (12252 bp)
Overview 1 RT 1: 214-5996 bp Neighborhood of RT #1 [214, 6133] Mfd PRK10262 RVT-Retrons HTH_19 Feature: gene Location: 214-3546 bp Feature: domain Description: Mfd Location: 250-3541 bp Feature: domain Description: Mfd Location: 2 50-3541 bp Feature: gene Location: 3602-4537 bp Feature: domain Description: PRK10262 Location: 3605-4526 bp Feature: domain Description: PRK102 62 Location: 3605-452 6 bp Feature: gene Location: 4924-5829 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5089-5608 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5089-5608 bp Feature: gene Location: 5451-5597 bp Feature: gene Location: 5807-6133 bp Feature: domain Description: HTH_19 Location: 5825-5996 bp Feature: domain Description: HTH_19 Location: 582 5-5996 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mfd (COG1197), PRK10262 (thioredoxin reductase; Provisional), RVT-Retrons, HTH_19 (pfam12844)

Seq: PFXG01000068.1 Zetaproteobacteria bacterium CG_4_9_14_3_um_filter_49_83 CG_4_9_14_3_um_filter_150_scaffold_62_c, whole genome shotgun sequence (126327 bp)
Overview 1 RT 1: 81984-89369 bp Neighborhood of RT #1 [81984, 89369] carB aspS RVT_N RVT-GII GIIM Feature: gene Location: 81984-85217 bp Feature: domain Description: carB Location: 81987-85203 bp Feature: domain Description: carB Location: 81987-85203 bp Feature: gene Location: 85368-87155 bp Feature: domain Description: aspS Location: 85377-87135 bp Feature: domain Description: aspS Location: 853 77-8713 5 bp Feature: gene Location: 87376-88707 bp Feature: domain Description: RVT_N Location: 87442-87685 bp Feature: domain Description: RVT_N Location: 87442-87685 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 87730-88342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8773 0-883 42 bp Feature: domain Description: GIIM Note: maturase Location: 88348-88462 bp Feature: domain Description: GIIM Note: maturase Location: 883 48-88462 bp Feature: gene Location: 88767-89105 bp Feature: gene Location: 89118-89369 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT carB (PRK12815), aspS (PRK00476), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)