myRT

myRT report for GCA_002791575.1_ASM279157v1

Download annotations/find similar RTs

Seq: PFXI01000013.1 Zetaproteobacteria bacterium CG_4_9_14_3_um_filter_54_145 CG_4_9_14_3_um_filter_150_scaffold_17955_c, whole genome shotgun sequence (5842 bp)
Overview 1 RT 1: 3-1985 bp Neighborhood of RT #1 [3, 2209] RVT-UG4 YdjM Feature: gene Location: 3-158 bp Feature: gene Location: 287-1171 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 488-929 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 488-929 bp Feature: gene Location: 1233-1415 bp Feature: gene Location: 1496-2209 bp Feature: domain Description: YdjM Location: 1499-1985 bp Feature: domain Description: YdjM Location: 1 499-1 985 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, YdjM (pfam04307)

Seq: PFXI01000083.1 Zetaproteobacteria bacterium CG_4_9_14_3_um_filter_54_145 CG_4_9_14_3_um_filter_150_scaffold_271_c, whole genome shotgun sequence (54160 bp)
Overview 1 RT 1: 3-5070 bp Neighborhood of RT #1 [3, 5070] RVT-GII GIIM RVT-UG4 asn_synth_AEB Feature: gene Location: 3-1415 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 369-1032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 369-1032 bp Feature: domain Description: GIIM Note: maturase Location: 1098-1314 bp Feature: domain Description: GIIM Note: maturase Location: 1098-1314 bp Feature: gene Location: 1524-1763 bp Feature: gene Location: 1792-2670 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1981-2428 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1981-2 42 8 bp Feature: gene Location: 2645-4558 bp Feature: domain Description: asn_synth_AEB Location: 2699-4334 bp Feature: domain Description: asn_synth_AEB Location: 2 699-4334 bp Feature: gene Location: 4555-5070 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RVT-UG4, asn_synth_AEB (TIGR01536)

Seq: PFXI01000080.1 Zetaproteobacteria bacterium CG_4_9_14_3_um_filter_54_145 CG_4_9_14_3_um_filter_150_scaffold_910_c, whole genome shotgun sequence (32923 bp)
Overview 1 RT 1: 3-4594 bp Neighborhood of RT #1 [3, 4719] RVT-GII RVT-GII GIIM DUF3365 PRK09966 GGDEF PFK_mixed Feature: gene Location: 3-692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 177-534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 177-53 4 bp Feature: gene Location: 753-1184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 759-840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 759-840 bp Feature: domain Description: GIIM Note: maturase Location: 909-1113 bp Feature: domain Description: GIIM Note: maturase Location: 909-1113 bp Feature: gene Location: 1650-3509 bp Feature: domain Description: DUF3365 Location: 1914-2088 bp Feature: domain Description: DUF3 3 65 Location: 1914-2088 bp Feature: domain Description: PRK09966 Location: 2166-2376 bp Feature: domain Description: PRK09966 Location: 2166-23 76 bp Feature: domain Description: GGDEF Location: 2994-3462 bp Feature: domain Description: GGDEF Location: 2994-3 462 bp Feature: gene Location: 3583-4719 bp Feature: domain Description: PFK_mixed Location: 3598-4594 bp Feature: domain Description: PFK_mixed Location: 3 598-4594 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF3365 (pfam11845), PRK09966 (diguanylate cyclase DgcN), GGDEF (TIGR00254), PFK_mixed (TIGR02483)