myRT

myRT report for GCA_002792605.1_ASM279260v1

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Seq: PFOQ01000006.1 Candidatus Pacebacteria bacterium CG_4_10_14_0_2_um_filter_40_20 CG_4_10_14_0.2_scaffold_0_c, whole genome shotgun sequence (394814 bp)
Overview 1 RT 1: 44069-47189 bp Neighborhood of RT #1 [44069, 47189] DUF3800 RVT-Retrons HipB Feature: gene Location: 44069-44809 bp Feature: domain Description: DUF3800 Location: 44090-44714 bp Feature: domain Description: DUF3800 Location: 44090-4471 4 bp Feature: gene Location: 45143-45664 bp Feature: gene Location: 45708-46679 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 45915-46491 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4591 5-46491 bp Feature: gene Location: 46666-46989 bp Feature: domain Description: HipB Location: 46681-46954 bp Feature: domain Description: HipB Location: 46681 -46954 bp Feature: gene Location: 47025-47189 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3800 (pfam12686), RVT-Retrons, HipB (COG1396)

Seq: PFOQ01000015.1 Candidatus Pacebacteria bacterium CG_4_10_14_0_2_um_filter_40_20 CG_4_10_14_0.2_scaffold_1_c, whole genome shotgun sequence (255863 bp)
Overview 1 RT 1: 107743-112344 bp Neighborhood of RT #1 [107743, 112454] TrbC Avd_like RVT-DGRs DDE_Tnp_IS1595 DDE_Tnp_IS1595 RVT-DGRs COG5340 AbiEii Feature: gene Location: 107743-108075 bp Feature: domain Description: TrbC Location: 107752-108022 bp Feature: domain Description: TrbC Location: 107752 -10802 2 bp Feature: gene Location: 108348-108689 bp Feature: domain Description: Avd_like Location: 108372-108681 bp Feature: domain Description: Avd_like Location: 108372 -108681 bp Feature: gene Location: 109050-109478 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 109245-109467 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1092 45-109467 bp Feature: gene Location: 109482-110168 bp Feature: domain Description: DDE_Tnp_IS1595 Location: 109533-109656 bp Feature: domain Description: DDE_Tnp_IS1595 Location: 109533-109656 bp Feature: domain Description: DDE_Tnp_IS1595 Location: 109689-110106 bp Feature: domain Description: DDE_Tnp_IS1595 Location: 109689-110106 bp Feature: gene Location: 110185-110937 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 110209-110746 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1102 09-110746 bp Feature: gene Location: 111020-111634 bp Feature: domain Description: COG5340 Location: 111050-111467 bp Feature: domain Description: COG5340 Location: 111050-111467 bp Feature: gene Location: 111672-112454 bp Feature: domain Description: AbiEii Location: 111762-112344 bp Feature: domain Description: AbiEii Location: 111762 -112 344 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TrbC (pfam04956), Avd_like (cd16376), RVT-DGRs, DDE_Tnp_IS1595 (pfam12762), COG5340 (Transcriptional regulator, predicted component of viral defense system ), AbiEii (pfam08843)