myRT

myRT report for GCA_002796305.1_ASM279630v1

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Seq: PCWZ01000036.1 Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_49_13 CG11_8_21_14_0.20_scaffold_1245_c, whole genome shotgun sequence (22250 bp)
Overview 1 RT 1: 3554-8058 bp Neighborhood of RT #1 [3554, 8066] AbiEii YfmG RVT-DGRs RVT-DGRs tig clpP Feature: gene Location: 3554-4222 bp Feature: domain Description: AbiEii Location: 3611-4052 bp Feature: domain Description: AbiEii Location: 361 1 -4052 bp Feature: gene Location: 4520-5269 bp Feature: domain Description: YfmG Location: 4598-5249 bp Feature: domain Description: YfmG Location: 4598-5249 bp Feature: gene Location: 5342-5734 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5438-5627 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5438-5627 bp Feature: gene Location: 5622-6086 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5664-5946 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5664-5946 bp Feature: gene Location: 6176-7477 bp Feature: domain Description: tig Location: 6212-7433 bp Feature: domain Description: tig Location: 621 2-7433 bp Feature: gene Location: 7479-8066 bp Feature: domain Description: clpP Location: 7482-8058 bp Feature: domain Description: clpP Location: 7482-8058 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), YfmG (COG1262), RVT-DGRs, tig (TIGR00115), clpP

Seq: PCWZ01000067.1 Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_49_13 CG11_8_21_14_0.20_scaffold_2743_c, whole genome shotgun sequence (14527 bp)
Overview 1 RT 1: 10909-14153 bp Neighborhood of RT #1 [10909, 14524] sdhA SQR_TypeB_1_TM RVT-GII Feature: gene Location: 10909-12651 bp Feature: domain Description: sdhA Location: 10921-12646 bp Feature: domain Description: sdhA Location: 1092 1-12 646 bp Feature: gene Location: 12723-13340 bp Feature: domain Description: SQR_TypeB_1_TM Location: 12744-13326 bp Feature: domain Description: SQR_TypeB_1_TM Location: 12 744-1332 6 bp Feature: gene Location: 13574-14524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13577-14153 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13577-14153 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT sdhA, SQR_TypeB_1_TM (cd03497), RVT-GII

Seq: PCWZ01000070.1 Deltaproteobacteria bacterium CG11_big_fil_rev_8_21_14_0_20_49_13 CG11_8_21_14_0.20_scaffold_2937_c, whole genome shotgun sequence (18380 bp)
Overview 1 RT 1: 11426-13562 bp Neighborhood of RT #1 [11426, 13567] FGE-sulfatase RVT-DGRs dinD Feature: gene Location: 11426-12130 bp Feature: domain Description: FGE-sulfatase Location: 11450-12092 bp Feature: domain Description: FGE-sulfatase Location: 11450-12092 bp Feature: gene Location: 12148-12285 bp Feature: gene Location: 12475-12840 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12478-12631 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12478-1263 1 bp Feature: gene Location: 13106-13261 bp Feature: gene Location: 13355-13567 bp Feature: domain Description: dinD Location: 13361-13562 bp Feature: domain Description: dinD Location: 13 3 61-13 562 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FGE-sulfatase (pfam03781), RVT-DGRs, dinD (PRK11525)