myRT

myRT report for GCA_002796835.1_ASM279683v1

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Seq: LUGL01000141.1 Elainella saxicola E1 E1_assembly_c260, whole genome shotgun sequence (8156 bp)
Overview 1 RT 1: 297-6251 bp Neighborhood of RT #1 [297, 6307] Cas2_I_II_III RVT-CRISPR Cas1_I-II-III SpoT TIGR03985 Feature: gene Location: 297-515 bp Feature: gene Location: 1475-1750 bp Feature: domain Description: Cas2_I_II_III Location: 1484-1712 bp Feature: domain Description: Cas2_I_II_III Location: 1 484-1 71 2 bp Feature: gene Location: 1794-3968 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2034-2631 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2034-2631 bp Feature: domain Description: Cas1_I-II-III Location: 2913-3933 bp Feature: domain Description: Cas1 _I-II-III Location: 291 3-3933 bp Feature: gene Location: 4276-4860 bp Feature: domain Description: SpoT Location: 4318-4702 bp Feature: domain Description: SpoT Location: 431 8-4702 bp Feature: gene Location: 4814-6307 bp Feature: domain Description: TIGR03985 Location: 5507-6251 bp Feature: domain Description: TIGR03985 Location: 5507-6251 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656), SpoT (COG0317), TIGR03985 (CRISPR-associated protein, TIGR03985 family)

Seq: LUGL01000030.1 Elainella saxicola E1 E1_assembly_c45, whole genome shotgun sequence (85208 bp)
Overview 1 RT 1: 1-2595 bp Neighborhood of RT #1 [1, 2975] YhhI RVT-GII GIIM dut dcd Feature: gene Location: 1-468 bp Feature: domain Description: YhhI Location: 151-391 bp Feature: domain Description: YhhI Location: 151-391 bp Feature: gene Location: 465-1529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 489-1092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 489-1092 bp Feature: domain Description: GIIM Note: maturase Location: 1131-1338 bp Feature: domain Description: GIIM Note: maturase Location: 1131-1338 bp Feature: gene Location: 1664-2101 bp Feature: domain Description: dut Location: 1673-2096 bp Feature: domain Description: dut Location: 1673-2 096 bp Feature: gene Location: 2166-2975 bp Feature: domain Description: dcd Location: 2175-2595 bp Feature: domain Description: dcd Location: 2 175-2 595 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), RVT-GII, GIIM (pfam08388), dut (TIGR00576), dcd (PRK00416)

Seq: LUGL01000283.1 Elainella saxicola E1 E1_assembly_c806, whole genome shotgun sequence (3623 bp)
Overview 1 RT 1: 2-3619 bp Neighborhood of RT #1 [2, 3621] IS285 RVT_N RVT-GII GIIM McrA Dimer_Tnp_Tn5 Feature: gene Location: 2-619 bp Feature: domain Description: IS285 Location: 62-617 bp Feature: domain Description: IS285 Location: 62-617 bp Feature: gene Location: 1260-2993 bp Feature: domain Description: RVT_N Location: 1293-1539 bp Feature: domain Description: RVT_N Location: 1293 -153 9 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1581-2211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1581-2211 bp Feature: domain Description: GIIM Note: maturase Location: 2295-2526 bp Feature: domain Description: GIIM Note: maturase Location: 2295-2526 bp Feature: domain Description: McrA Location: 2604-2910 bp Feature: domain Description: McrA Location: 2604-2910 bp Feature: gene Location: 3009-3314 bp Feature: gene Location: 3298-3621 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 3340-3619 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 3 3 40-3 619 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), Dimer_Tnp_Tn5 (pfam02281)

Seq: LUGL01000231.1 Elainella saxicola E1 E1_assembly_rep_c9516, whole genome shotgun sequence (98395 bp)
Overview 1 RT 1: 22218-25856 bp Neighborhood of RT #1 [22218, 25879] PRK08181 YfmG RVT-DGRs RVT-DGRs Avd_like YfmG Feature: gene Location: 22218-22406 bp Feature: domain Description: PRK08181 Location: 22266-22395 bp Feature: domain Description: PRK08181 Location: 22266-22395 bp Feature: gene Location: 22426-23361 bp Feature: domain Description: YfmG Location: 22471-23338 bp Feature: domain Description: YfmG Location: 224 71-23338 bp Feature: gene Location: 23676-24299 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 23679-24084 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 23679-24 084 bp Feature: gene Location: 24310-24693 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 24472-24637 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 24 4 72-24 637 bp Feature: gene Location: 24738-25094 bp Feature: domain Description: Avd_like Location: 24771-25074 bp Feature: domain Description: Avd_like Location: 24 771-25074 bp Feature: gene Location: 25172-25879 bp Feature: domain Description: YfmG Location: 25175-25856 bp Feature: domain Description: YfmG Location: 25175-25856 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK08181 (transposase; Validated), YfmG (COG1262), RVT-DGRs, Avd_like (cd16376)

Seq: LUGL01000238.1 Elainella saxicola E1 E1_assembly_rep_c9526, whole genome shotgun sequence (37942 bp)
Overview 1 RT 1: 18610-25553 bp Neighborhood of RT #1 [18610, 25567] YfmG RVT-DGRs Avd_like Laminin_G_3 GLECT YfmG Feature: gene Location: 18610-18762 bp Feature: gene Location: 19065-19877 bp Feature: domain Description: YfmG Location: 19131-19860 bp Feature: domain Description: YfmG Location: 19131-19860 bp Feature: gene Location: 20084-21226 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 20288-20933 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 20288-20933 bp Feature: gene Location: 21223-21573 bp Feature: domain Description: Avd_like Location: 21244-21550 bp Feature: domain Description: Avd_like Location: 21244-215 5 0 bp Feature: gene Location: 21719-25567 bp Feature: domain Description: Laminin_G_3 Location: 23132-23597 bp Feature: domain Description: Laminin_G_3 Location: 23132-235 97 bp Feature: domain Description: GLECT Location: 23888-24239 bp Feature: domain Description: GLECT Location: 23888-24239 bp Feature: domain Description: YfmG Location: 24734-25553 bp Feature: domain Description: YfmG Location: 24734-25 5 5 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), RVT-DGRs, Avd_like (cd16376), Laminin_G_3 (pfam13385), GLECT (smart00276)

Seq: LUGL01000239.1 Elainella saxicola E1 E1_assembly_rep_c9529, whole genome shotgun sequence (25762 bp)
Overview 1 RT 1: 4380-9800 bp Neighborhood of RT #1 [4380, 9811] DUF3883 RVT_N RVT-GII GIIM McrA PRK08181 Feature: gene Location: 4380-5315 bp Feature: gene Location: 5392-5958 bp Feature: domain Description: DUF3883 Location: 5602-5893 bp Feature: domain Description: DUF3883 Location: 56 02-5893 bp Feature: gene Location: 6459-8333 bp Feature: domain Description: RVT_N Location: 6588-6834 bp Feature: domain Description: RVT_N Location: 6 588-6 834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6876-7533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 876 -7533 bp Feature: domain Description: GIIM Note: maturase Location: 7644-7866 bp Feature: domain Description: GIIM Note: maturase Location: 76 44-786 6 bp Feature: domain Description: McrA Location: 7938-8226 bp Feature: domain Description: McrA Location: 7938-8226 bp Feature: gene Location: 8448-8612 bp Feature: gene Location: 9017-9811 bp Feature: domain Description: PRK08181 Location: 9077-9800 bp Feature: domain Description: PRK08181 Location: 9077-9800 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3883 (pfam13020), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), PRK08181 (transposase; Validated)