myRT

myRT report for GCA_002797315.1_ASM279731v1

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Seq: KZ454936.1 Bacillus sp. FJAT-44742 genomic scaffold Scaffold1, whole genome shotgun sequence (3668710 bp)
Overview 1 RT 1: 128544-133938 bp 2 RT 2: 502909-507894 bp 3 RT 3: 1278413-1281081 bp 4 RT 4: 1804277-1807941 bp 5 RT 5: 2586393-2592833 bp Neighborhood of RT #1 [128544, 133964] PRK13337 RVT-GII GIIM COG3564 ALDH_ACDHII-AcoD Neighborhood of RT #2 [502909, 507926] UBA_atUPL1_2_like UBA_atUPL1_2_like UBA_atUPL1_2_like YfhD RVT-GII GIIM TolB TolB TolB CynT Neighborhood of RT #3 [1278413, 1281081] UbiE PrpB RVT-GII Toprim_2 Neighborhood of RT #4 [1804277, 1807941] DUF2621 RVT-GII GIIM Neighborhood of RT #5 [2586393, 2592838] PRK00509 RVT-GII GIIM EcsC PRK00180 Feature: gene Location: 128544-129449 bp Feature: domain Description: PRK13337 Location: 128547-129444 bp Feature: domain Description: PRK1 3337 Location: 1 28547-1 29444 bp Feature: gene Location: 129789-130124 bp Feature: gene Location: 130653-131936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130896-131511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 30896-1 31 51 1 bp Feature: domain Description: GIIM Note: maturase Location: 131571-131775 bp Feature: domain Description: GIIM Note: maturase Location: 1 31 571 -1 31 775 bp Feature: gene Location: 132023-132385 bp Feature: domain Description: COG3564 Location: 132029-132362 bp Feature: domain Description: COG3564 Location: 1 32029-1 32362 bp Feature: gene Location: 132444-133964 bp Feature: domain Description: ALDH_ACDHII-AcoD Location: 132501-133938 bp Feature: domain Description: ALDH_ACDHII-AcoD Location: 1 32501 -1 33938 bp Feature: gene Location: 502909-503760 bp Feature: domain Description: UBA_atUPL1_2_like Location: 503140-503188 bp Feature: domain Description: UBA_atUPL1 _2_like Location: 5031 40-5031 88 bp Feature: domain Description: UBA_atUPL1_2_like Location: 503212-503257 bp Feature: domain Description: UBA_atUPL1 _2_like Location: 50321 2-503257 bp Feature: domain Description: UBA_atUPL1_2_like Location: 503281-503326 bp Feature: domain Description: UBA_atUPL1 _2_like Location: 503281 -503326 bp Feature: gene Location: 503787-503930 bp Feature: domain Description: YfhD Location: 503790-503904 bp Feature: domain Description: YfhD Location: 503790-503904 bp Feature: gene Location: 504415-505767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 504727-505342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 504727-505342 bp Feature: domain Description: GIIM Note: maturase Location: 505402-505606 bp Feature: domain Description: GIIM Note: maturase Location: 505402-505606 bp Feature: gene Location: 505854-507167 bp Feature: domain Description: TolB Location: 505962-506298 bp Feature: domain Description: TolB Location: 505962-506298 bp Feature: domain Description: TolB Location: 506325-506514 bp Feature: domain Description: TolB Location: 506325-50651 4 bp Feature: domain Description: TolB Location: 506532-506844 bp Feature: domain Description: TolB Location: 506532-506844 bp Feature: gene Location: 507348-507926 bp Feature: domain Description: CynT Location: 507351-507894 bp Feature: domain Description: CynT Location: 507351 -507894 bp Feature: gene Location: 1278413-1279198 bp Feature: domain Description: UbiE Location: 1278428-1278905 bp Feature: domain Description: UbiE Location: 1 278428-1 278905 bp Feature: gene Location: 1279262-1280137 bp Feature: domain Description: PrpB Location: 1279274-1280123 bp Feature: domain Description: PrpB Location: 1 279274-1 2801 23 bp Feature: gene Location: 1280351-1280599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1280360-1280444 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 280360-1 280444 bp Feature: gene Location: 1280763-1280915 bp Feature: domain Description: Toprim_2 Location: 1280772-1280898 bp Feature: domain Description: Toprim_2 Location: 1 280772-1 280898 bp Feature: gene Location: 1280944-1281081 bp Feature: gene Location: 1804277-1804849 bp Feature: gene Location: 1804821-1805246 bp Feature: domain Description: DUF2621 Location: 1804833-1805244 bp Feature: domain Description: DUF2621 Location: 1 804833-1 805244 bp Feature: gene Location: 1805372-1806655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1805615-1806230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 80561 5-1 806230 bp Feature: domain Description: GIIM Note: maturase Location: 1806290-1806494 bp Feature: domain Description: GIIM Note: maturase Location: 1 806290-1 806494 bp Feature: gene Location: 1806873-1807088 bp Feature: gene Location: 1807726-1807941 bp Feature: gene Location: 2586393-2587598 bp Feature: domain Description: PRK00509 Location: 2586402-2587581 bp Feature: domain Description: PRK00509 Location: 2586402-2587581 bp Feature: gene Location: 2587988-2588293 bp Feature: gene Location: 2588446-2589729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2588689-2589304 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2588689-2589304 bp Feature: domain Description: GIIM Note: maturase Location: 2589364-2589568 bp Feature: domain Description: GIIM Note: maturase Location: 2589364-2589568 bp Feature: gene Location: 2590576-2591418 bp Feature: domain Description: EcsC Location: 2590603-2591398 bp Feature: domain Description: EcsC Location: 2590603-2591 398 bp Feature: gene Location: 2591576-2592838 bp Feature: domain Description: PRK00180 Location: 2591660-2592833 bp Feature: domain Description: PRK001 80 Location: 2591 660-2592833 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13337 (putative lipid kinase; Reviewed), RVT-GII, GIIM (pfam08388), COG3564 (Uncharacterized conserved protein, DUF779 family ), ALDH_ACDHII-AcoD (cd07116), UBA_atUPL1_2_like (cd14327), YfhD (pfam14151), TolB (COG0823), CynT (COG0288), UbiE (COG2226)
PrpB (COG2513), Toprim_2 (pfam13155), DUF2621 (pfam11084), PRK00509 (argininosuccinate synthase; Provisional), EcsC (pfam12787), PRK00180 (acetate kinase A/propionate kinase 2; Reviewed)

Seq: KZ454937.1 Bacillus sp. FJAT-44742 genomic scaffold Scaffold2, whole genome shotgun sequence (320657 bp)
Overview 1 RT 1: 121568-128356 bp 2 RT 2: 135488-144665 bp 3 RT 3: 239203-245351 bp Neighborhood of RT #1 [121568, 128415] COG4127 group_II_RT_mat RVT-UNC xerC Neighborhood of RT #2 [135488, 144682] cobT_DBIPRT CspC RVT-GII HNHc HPP katE Neighborhood of RT #3 [239203, 245351] Rep_3 pXO2-34 RVT-GII HNHc Spr Feature: gene Location: 121568-121834 bp Feature: domain Description: COG4127 Location: 121604-121814 bp Feature: domain Description: COG412 7 Location: 12 1604-12 1814 bp Feature: gene Location: 121865-122008 bp Feature: gene Location: 122809-126048 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 122893-123136 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 12 2 893-12 3136 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 123223-123919 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 12 32 2 3-12 3919 bp Feature: gene Location: 126050-126928 bp Feature: gene Location: 127264-128415 bp Feature: domain Description: xerC Location: 127498-128356 bp Feature: domain Description: xerC Location: 12 7498-12 8356 bp Feature: gene Location: 135488-136540 bp Feature: domain Description: cobT_DBIPRT Location: 135533-136526 bp Feature: domain Description: cobT_DBIPRT Location: 135533-13652 6 bp Feature: gene Location: 138028-138225 bp Feature: domain Description: CspC Location: 138031-138220 bp Feature: domain Description: CspC Location: 138031-1382 2 0 bp Feature: gene Location: 138447-140222 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 138705-139410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 138705-139410 bp Feature: domain Description: HNHc Note: nucleases Location: 139968-140106 bp Feature: domain Description: HNHc Note: nucleases Location: 139968-140106 bp Feature: gene Location: 141646-142200 bp Feature: domain Description: HPP Location: 141844-142186 bp Feature: domain Description: HPP Location: 141844-142 186 bp Feature: gene Location: 142547-144682 bp Feature: domain Description: katE Location: 142562-144665 bp Feature: domain Description: katE Location: 142 562 -144665 bp Feature: gene Location: 239203-240414 bp Feature: domain Description: Rep_3 Location: 239275-239914 bp Feature: domain Description: Rep_3 Location: 2 392 75-2 39914 bp Feature: gene Location: 241016-241261 bp Feature: domain Description: pXO2-34 Location: 241046-241244 bp Feature: domain Description: pXO2 -34 Location: 2 41046-2 412 44 bp Feature: gene Location: 242263-244038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 242521-243226 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 42 52 1-2 432 2 6 bp Feature: domain Description: HNHc Note: nucleases Location: 243784-243922 bp Feature: domain Description: HNHc Note: nucleases Location: 2 43784-2 4392 2 bp Feature: gene Location: 244055-244762 bp Feature: domain Description: Spr Location: 244271-244745 bp Feature: domain Description: Spr Location: 2 442 71-2 44745 bp Feature: gene Location: 244779-245351 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), group_II_RT_mat (TIGR04416), RVT-UG1/RVT-DGRs/RVT-CRISPR/RVT-Retrons(RVT-UNC), xerC (PRK01287), cobT_DBIPRT (TIGR03160), CspC (COG1278), RVT-GII, HNHc (smart00507), HPP (pfam04982), katE (PRK11249)
Rep_3 (pfam01051), pXO2-34 (pfam17362), Spr (COG0791)