myRT

myRT report for GCA_002807645.1_ASM280764v1

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Seq: NPMW01000025.1 Virgibacillus profundi strain P3-B8 NODE_25_length_16291_cov_84.79, whole genome shotgun sequence (16291 bp)
Overview 1 RT 1: 8079-14586 bp Neighborhood of RT #1 [8079, 14586] PRK13922 PRK13927 RVT-GII Intron_maturas2 HNHc RadC Feature: gene Location: 8079-8963 bp Feature: domain Description: PRK13922 Location: 8088-8913 bp Feature: domain Description: PRK1 3922 Location: 8088-891 3 bp Feature: gene Location: 8976-10016 bp Feature: domain Description: PRK13927 Location: 8994-9981 bp Feature: domain Description: PRK1 3927 Location: 8994-9981 bp Feature: gene Location: 10482-12365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10746-11586 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 0746-1 1 586 bp Feature: domain Description: Intron_maturas2 Location: 11745-11952 bp Feature: domain Description: Intron_maturas2 Location: 1 1 745-1 1 952 bp Feature: domain Description: HNHc Note: nucleases Location: 12144-12321 bp Feature: domain Description: HNHc Note: nucleases Location: 1 21 44-1 2321 bp Feature: gene Location: 12916-13485 bp Feature: domain Description: RadC Location: 12940-13465 bp Feature: domain Description: RadC Location: 1 2940-1 3465 bp Feature: gene Location: 13678-14586 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13922 (rod shape-determining protein MreC; Provisional), PRK13927 (rod shape-determining protein MreB; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), RadC (pfam04002)

Seq: NPMW01000030.1 Virgibacillus profundi strain P3-B8 NODE_30_length_3520_cov_1.29738, whole genome shotgun sequence (3520 bp)
Overview 1 RT 1: 1-3519 bp Neighborhood of RT #1 [1, 3518] DNA_pol_viral_C X DNA_pol_viral_N RT_ZFREV_like RVT-UNC DNA_pol_viral_C Feature: gene Location: 1-777 bp Feature: domain Description: DNA_pol_viral_C Location: 49-745 bp Feature: domain Description: DNA_pol_viral_C Location: 49-745 bp Feature: gene Location: 834-992 bp Feature: domain Description: X Location: 837-954 bp Feature: domain Description: X Location: 837-954 bp Feature: gene Location: 1383-3518 bp Feature: domain Description: DNA_pol_viral_N Location: 1473-2517 bp Feature: domain Description: DNA_pol_viral_N Location: 1473-2 517 bp Feature: domain Description: RT_ZFREV_like Location: 2571-2790 bp Feature: domain Description: RT_ZFREV_like Location: 2 571-2 790 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 3003-3258 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 3003-32 58 bp Feature: domain Description: DNA_pol_viral_C Location: 3264-3519 bp Feature: domain Description: DNA_pol_viral_C Location: 32 64-3519 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DNA_pol_viral_C (pfam00336), X (PHA02510), DNA_pol_viral_N (pfam00242), RT_ZFREV_like (cd03715), RVT-UG18/RVT-DGRs/RVT-UG4/RVT-GII(RVT-UNC)

Seq: NPMW01000003.1 Virgibacillus profundi strain P3-B8 NODE_3_length_288267_cov_97.38, whole genome shotgun sequence (288267 bp)
Overview 1 RT 1: 236990-240434 bp Neighborhood of RT #1 [236990, 240550] RhtB XRE RVT-GII GIIM CcmA ABC2_membrane Feature: gene Location: 236990-237622 bp Feature: domain Description: RhtB Location: 236993-237599 bp Feature: domain Description: RhtB Location: 23 6993 -23 7599 bp Feature: gene Location: 237815-237943 bp Feature: domain Description: XRE Location: 237839-237938 bp Feature: domain Description: XRE Location: 23 783 9-23 793 8 bp Feature: gene Location: 237945-238514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 237948-238089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23 7948-23 8089 bp Feature: domain Description: GIIM Note: maturase Location: 238131-238350 bp Feature: domain Description: GIIM Note: maturase Location: 23 813 1-23 83 50 bp Feature: gene Location: 238875-239819 bp Feature: domain Description: CcmA Location: 238887-239790 bp Feature: domain Description: CcmA Location: 23 8887-23 9790 bp Feature: gene Location: 239819-240550 bp Feature: domain Description: ABC2_membrane Location: 239840-240434 bp Feature: domain Description: ABC2_membrane Location: 23 9840-24043 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RhtB (COG1280), XRE (COG1476), RVT-GII, GIIM (pfam08388), CcmA (COG4133), ABC2_membrane (pfam01061)

Seq: NPMW01000038.1 Virgibacillus profundi strain P3-B8 NODE_40_length_936_cov_0.839308, whole genome shotgun sequence (936 bp)
Overview 1 RT 1: 1-682 bp Neighborhood of RT #1 [1, 717] RVT-GII Feature: gene Location: 1-141 bp Feature: gene Location: 241-717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 247-682 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24 7-682 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: NPMW01000008.1 Virgibacillus profundi strain P3-B8 NODE_8_length_205772_cov_89.6635, whole genome shotgun sequence (205772 bp)
Overview 1 RT 1: 28313-33244 bp Neighborhood of RT #1 [28313, 33244] BioY RVT-GII PRK12276 Feature: gene Location: 28313-28882 bp Feature: domain Description: BioY Location: 28334-28844 bp Feature: domain Description: BioY Location: 28334-28844 bp Feature: gene Location: 28996-29130 bp Feature: gene Location: 29216-30979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29474-30173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 29474-30173 bp Feature: gene Location: 32027-32770 bp Feature: domain Description: PRK12276 Location: 32033-32765 bp Feature: domain Description: PRK12276 Location: 32033-32765 bp Feature: gene Location: 32957-33244 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BioY (pfam02632), RVT-GII, PRK12276 (putative heme peroxidase; Provisional)