myRT

myRT report for GCA_002810025.1_ASM281002v1

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Seq: PIJJ01000004.1 Escherichia coli strain K56-16 NODE_4_length_509247_cov_37.9834, whole genome shotgun sequence (509247 bp)
Overview 1 RT 1: 158598-162083 bp Neighborhood of RT #1 [158598, 162083] PRK13889 RVT-Retrons HTH_XRE Feature: gene Location: 158598-158750 bp Feature: gene Location: 158824-160326 bp Feature: domain Description: PRK13889 Location: 158827-159409 bp Feature: domain Description: PRK1 3889 Location: 1 58827-1 59409 bp Feature: gene Location: 160403-161503 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 160544-161096 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 60544-1 61 096 bp Feature: gene Location: 161496-161777 bp Feature: domain Description: HTH_XRE Location: 161511-161676 bp Feature: domain Description: HTH_XRE Location: 1 61 51 1 -1 61 676 bp Feature: gene Location: 161868-162083 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13889 (conjugal transfer relaxase TraA; Provisional), RVT-Retrons, HTH_XRE (smart00530)

Seq: PIJJ01000005.1 Escherichia coli strain K56-16 NODE_5_length_478038_cov_35.6102, whole genome shotgun sequence (478038 bp)
Overview 1 RT 1: 370482-378575 bp Neighborhood of RT #1 [370482, 378575] Arm-DNA-bind_3 RVT-AbiP2 HTH_29 HTH_33 DDE_3 Feature: gene Location: 370482-371231 bp Feature: domain Description: Arm-DNA-bind_3 Location: 370512-370767 bp Feature: domain Description: Arm-DNA-bind_3 Location: 370512 -370767 bp Feature: gene Location: 371494-375351 bp Feature: gene Location: 375574-377112 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 376003-376459 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 376003-376459 bp Feature: gene Location: 377214-378251 bp Feature: domain Description: HTH_29 Location: 377310-377481 bp Feature: domain Description: HTH_2 9 Location: 377310-377481 bp Feature: domain Description: HTH_33 Location: 377514-377676 bp Feature: domain Description: HTH_33 Location: 377514-377676 bp Feature: domain Description: DDE_3 Location: 377718-378147 bp Feature: domain Description: DDE_3 Location: 377718-378147 bp Feature: gene Location: 378285-378575 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_3 (pfam13356), RVT-AbiP2, HTH_29 (pfam13551), HTH_33 (pfam13592), DDE_3 (pfam13358)