myRT

myRT report for GCA_002810225.1_ASM281022v1

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Seq: PIJT01000015.1 Pseudomonas putida strain CA-3 contig_15, whole genome shotgun sequence (163596 bp)
Overview 1 RT 1: 75316-80947 bp Neighborhood of RT #1 [75316, 80964] Smf RVT_N RVT-GII YkfC HNH def fmt Feature: gene Location: 75316-76413 bp Feature: domain Description: Smf Location: 75355-76405 bp Feature: domain Description: Smf Location: 75355-76405 bp Feature: gene Location: 76810-77082 bp Feature: gene Location: 77651-79357 bp Feature: RT Description: RVT_N Location: 77708-77951 bp Feature: RT Description: RVT_N Location: 77708-77951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77996-78629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 77996-78629 bp Feature: domain Description: YkfC Location: 78830-78992 bp Feature: domain Description: YkfC Location: 78830-78992 bp Feature: domain Description: HNH Note: nucleases Location: 79169-79307 bp Feature: domain Description: HNH Note: nucleases Location: 791 69-79307 bp Feature: gene Location: 79465-79971 bp Feature: domain Description: def Location: 79468-79954 bp Feature: domain Description: def Location: 79468-79954 bp Feature: gene Location: 80032-80964 bp Feature: domain Description: fmt Location: 80035-80947 bp Feature: domain Description: fmt Location: 80035-80947 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Smf (COG0758), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), def (PRK00150), fmt (TIGR00460)

Seq: PIJT01000032.1 Pseudomonas putida strain CA-3 contig_32, whole genome shotgun sequence (84151 bp)
Overview 1 RT 1: 7269-11812 bp Neighborhood of RT #1 [7269, 11812] DUF2442 HTH_31 RVT-Retrons Trypsin_2 Feature: gene Location: 7269-7721 bp Feature: domain Description: DUF2442 Location: 7302-7509 bp Feature: domain Description: DUF2 442 Location: 7302 -7509 bp Feature: domain Description: HTH_31 Location: 7563-7677 bp Feature: domain Description: HTH_31 Location: 7563-7677 bp Feature: gene Location: 8165-8488 bp Feature: gene Location: 8502-10289 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8649-9252 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8649-92 52 bp Feature: domain Description: Trypsin_2 Location: 9645-10065 bp Feature: domain Description: Trypsin_2 Location: 9645-10065 bp Feature: gene Location: 10581-11447 bp Feature: gene Location: 11582-11812 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2442 (pfam10387), HTH_31 (pfam13560), RVT-Retrons, Trypsin_2 (pfam13365)

Seq: PIJT01000005.1 Pseudomonas putida strain CA-3 contig_5, whole genome shotgun sequence (299321 bp)
Overview 1 RT 1: 57771-61488 bp Neighborhood of RT #1 [57771, 61490] ArdC RVT-GII GIIM RVT-GII MvaT_DBD Feature: gene Location: 57771-58094 bp Feature: gene Location: 58180-59118 bp Feature: domain Description: ArdC Location: 58186-59101 bp Feature: domain Description: ArdC Location: 58186-59101 bp Feature: gene Location: 59200-59811 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59203-59362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59203 -593 62 bp Feature: domain Description: GIIM Note: maturase Location: 59419-59644 bp Feature: domain Description: GIIM Note: maturase Location: 59419-59644 bp Feature: gene Location: 59715-60620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60072-60522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60072-60522 bp Feature: gene Location: 60755-60940 bp Feature: gene Location: 61125-61490 bp Feature: domain Description: MvaT_DBD Location: 61365-61488 bp Feature: domain Description: MvaT_DBD Location: 613 65-61488 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdC (COG4227), RVT-GII, GIIM (pfam08388), MvaT_DBD (cl40688)

Seq: PIJT01000072.1 Pseudomonas putida strain CA-3 contig_72, whole genome shotgun sequence (1592 bp)
Overview 1 RT 1: 72-1422 bp Neighborhood of RT #1 [72, 1589] RVT-GII GIIM Feature: gene Location: 72-1589 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 525-1140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 525-114 0 bp Feature: domain Description: GIIM Note: maturase Location: 1197-1422 bp Feature: domain Description: GIIM Note: maturase Location: 1197-14 22 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)