myRT

myRT report for GCA_002810995.1_Bfra_CL04T03C20_v1

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Seq: PDCU01000001.1 Bacteroides fragilis strain CL04T03C20 contig0001, whole genome shotgun sequence (1080273 bp)
Overview 1 RT 1: 1046020-1049884 bp Neighborhood of RT #1 [1046020, 1049889] Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like RVT-Retrons HTH_17 DUF3876 Feature: gene Location: 1046020-1046280 bp Feature: gene Location: 1046310-1047533 bp Feature: domain Description: Arm-DNA-bind_5 Location: 1046349-1046610 bp Feature: domain Description: Arm-DNA-bind_5 Location: 1 046349-1 04661 0 bp Feature: domain Description: Phage_int_SAM_5 Location: 1046649-1046952 bp Feature: domain Description: Phage_int_SAM_5 Location: 1 046649-1 046952 bp Feature: domain Description: INTN1_C_like Location: 1047003-1047492 bp Feature: domain Description: INTN1 _C_like Location: 1 047003-1 047492 bp Feature: gene Location: 1047542-1048390 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1047701-1048223 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 047701 -1 048223 bp Feature: gene Location: 1049234-1049575 bp Feature: domain Description: HTH_17 Location: 1049405-1049549 bp Feature: domain Description: HTH_1 7 Location: 1 049405-1 049549 bp Feature: gene Location: 1049587-1049889 bp Feature: domain Description: DUF3876 Location: 1049614-1049884 bp Feature: domain Description: DUF3876 Location: 1 04961 4-1 049884 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185), RVT-Retrons, HTH_17 (pfam12728), DUF3876 (pfam12992)

Seq: PDCU01000002.1 Bacteroides fragilis strain CL04T03C20 contig0002, whole genome shotgun sequence (816984 bp)
Overview 1 RT 1: 590196-599154 bp Neighborhood of RT #1 [590196, 599162] GlnA3 RVT-Retrons rpsA RNase_Z Feature: gene Location: 590196-592385 bp Feature: domain Description: GlnA3 Location: 590271-592383 bp Feature: domain Description: GlnA3 Location: 5902 71-592 383 bp Feature: gene Location: 592625-594844 bp Feature: gene Location: 595051-596163 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 595366-595915 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 595366-595915 bp Feature: gene Location: 596305-598098 bp Feature: domain Description: rpsA Location: 596383-597991 bp Feature: domain Description: rpsA Location: 596383-597991 bp Feature: gene Location: 598248-599162 bp Feature: domain Description: RNase_Z Location: 598263-599154 bp Feature: domain Description: RNase_Z Location: 5982 63-599154 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GlnA3 (COG3968), RVT-Retrons, rpsA (TIGR00717), RNase_Z (TIGR02651)

Seq: PDCU01000003.1 Bacteroides fragilis strain CL04T03C20 contig0003, whole genome shotgun sequence (553766 bp)
Overview 1 RT 1: 525036-531779 bp Neighborhood of RT #1 [525036, 531814] LbH_MAT_GAT Gph RVT-UG5 COG2865 SLATT_5 Feature: gene Location: 525036-525659 bp Feature: domain Description: LbH_MAT_GAT Location: 525075-525612 bp Feature: domain Description: LbH_MAT_GAT Location: 525075-525612 bp Feature: gene Location: 525637-526275 bp Feature: domain Description: Gph Location: 525640-526267 bp Feature: domain Description: Gph Location: 525640-526267 bp Feature: gene Location: 526539-529541 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 527067-527553 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 527067-527553 bp Feature: gene Location: 529546-530925 bp Feature: domain Description: COG2865 Location: 529558-530914 bp Feature: domain Description: COG2865 Location: 529558-53 0914 bp Feature: gene Location: 531086-531814 bp Feature: domain Description: SLATT_5 Location: 531212-531779 bp Feature: domain Description: SLATT_5 Location: 53 1212-53 1779 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LbH_MAT_GAT (cd03357), Gph (COG0546), RVT-UG5, COG2865 (Predicted transcriptional regulator, contains HTH domain ), SLATT_5 (pfam18160)

Seq: PDCU01000006.1 Bacteroides fragilis strain CL04T03C20 contig0006, whole genome shotgun sequence (418200 bp)
Overview 1 RT 1: 287032-288454 bp Neighborhood of RT #1 [287032, 288454] HTH_28 RVT-GII Feature: gene Location: 287032-287166 bp Feature: gene Location: 287241-287531 bp Feature: domain Description: HTH_28 Location: 287265-287412 bp Feature: domain Description: HTH_28 Location: 287265-2874 12 bp Feature: gene Location: 287652-287849 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 287655-287847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 287655-28784 7 bp Feature: gene Location: 287879-288088 bp Feature: gene Location: 288092-288454 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_28 (pfam13518), RVT-GII