myRT

myRT report for GCA_002811025.1_Bfra_1284_v1

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Seq: PDCX01000005.1 Bacteroides fragilis strain 1284 contig0005, whole genome shotgun sequence (266439 bp)
Overview 1 RT 1: 115678-120270 bp Neighborhood of RT #1 [115678, 120386] Cas2_I_II_III RVT-CRISPR Cas1_I-II-III Cmr6_III-B Cas_Cmr5 Feature: gene Location: 115678-115914 bp Feature: gene Location: 116455-116745 bp Feature: domain Description: Cas2_I_II_III Location: 116482-116692 bp Feature: domain Description: Cas2_I_II_III Location: 1 1 6482-1 1 6692 bp Feature: gene Location: 116739-119009 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 116946-117552 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1 1 6946-1 1 7552 bp Feature: domain Description: Cas1_I-II-III Location: 118011-118968 bp Feature: domain Description: Cas1 _I-II-III Location: 1 1 801 1 -1 1 8968 bp Feature: gene Location: 119029-119973 bp Feature: domain Description: Cmr6_III-B Location: 119185-119962 bp Feature: domain Description: Cmr6_III-B Location: 1 1 91 85-1 1 9962 bp Feature: gene Location: 119976-120386 bp Feature: domain Description: Cas_Cmr5 Location: 120024-120270 bp Feature: domain Description: Cas_Cmr5 Location: 1 20024-1 20270 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656), Cmr6_III-B (cd09661), Cas_Cmr5 (pfam09701)

Seq: PDCX01000012.1 Bacteroides fragilis strain 1284 contig0012, whole genome shotgun sequence (150820 bp)
Overview 1 RT 1: 36221-45185 bp Neighborhood of RT #1 [36221, 45187] RNase_Z rpsA RVT-Retrons GlnA3 Feature: gene Location: 36221-37135 bp Feature: domain Description: RNase_Z Location: 36236-37127 bp Feature: domain Description: RNase_Z Location: 362 36-3712 7 bp Feature: gene Location: 37285-39078 bp Feature: domain Description: rpsA Location: 37363-38971 bp Feature: domain Description: rpsA Location: 37363-38971 bp Feature: gene Location: 39220-40332 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 39535-40084 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 39535-40084 bp Feature: gene Location: 40539-42758 bp Feature: gene Location: 42998-45187 bp Feature: domain Description: GlnA3 Location: 43073-45185 bp Feature: domain Description: GlnA3 Location: 43073-45185 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RNase_Z (TIGR02651), rpsA (TIGR00717), RVT-Retrons, GlnA3 (COG3968)

Seq: PDCX01000018.1 Bacteroides fragilis strain 1284 contig0018, whole genome shotgun sequence (103732 bp)
Overview 1 RT 1: 49941-53481 bp Neighborhood of RT #1 [49941, 53495] DUF4133 DUF4134 RVT-GII Intron_maturas2 HNHc DUF4134 DUF4134 Feature: gene Location: 49941-50234 bp Feature: domain Description: DUF4133 Location: 49980-50160 bp Feature: domain Description: DUF413 3 Location: 49980-50160 bp Feature: gene Location: 50248-50442 bp Feature: domain Description: DUF4134 Location: 50338-50428 bp Feature: domain Description: DUF413 4 Location: 503 3 8-50428 bp Feature: gene Location: 50467-52278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50731-51553 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5073 1-51553 bp Feature: domain Description: Intron_maturas2 Location: 51742-51952 bp Feature: domain Description: Intron_maturas2 Location: 51742-51952 bp Feature: domain Description: HNHc Note: nucleases Location: 52102-52207 bp Feature: domain Description: HNHc Note: nucleases Location: 52102-52207 bp Feature: gene Location: 52820-53110 bp Feature: domain Description: DUF4134 Location: 52895-53090 bp Feature: domain Description: DUF413 4 Location: 52895-53 090 bp Feature: gene Location: 53172-53495 bp Feature: domain Description: DUF4134 Location: 53196-53481 bp Feature: domain Description: DUF413 4 Location: 53 196-53 481 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4133 (pfam13571), DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: PDCX01000021.1 Bacteroides fragilis strain 1284 contig0021, whole genome shotgun sequence (77750 bp)
Overview 1 RT 1: 34633-39233 bp Neighborhood of RT #1 [34633, 39265] MPTase-PolyVal RVT-GII Intron_maturas2 DUF1738 Feature: gene Location: 34633-35004 bp Feature: gene Location: 35072-36397 bp Feature: domain Description: MPTase-PolyVal Location: 35351-35663 bp Feature: domain Description: MPTase-PolyVal Location: 35351-35663 bp Feature: gene Location: 36387-38198 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36651-37473 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36651-374 73 bp Feature: domain Description: Intron_maturas2 Location: 37614-37854 bp Feature: domain Description: Intron_maturas2 Location: 37614 -37854 bp Feature: gene Location: 38329-38586 bp Feature: gene Location: 38762-39265 bp Feature: domain Description: DUF1738 Location: 38816-39233 bp Feature: domain Description: DUF1738 Location: 38816-39233 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MPTase-PolyVal (pfam18818), RVT-GII, Intron_maturas2 (pfam01348), DUF1738 (pfam08401)