myRT

myRT report for GCA_002811065.1_Bfra_12905_v1

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Seq: PDCW01000009.1 Bacteroides fragilis strain 12905 contig0009, whole genome shotgun sequence (189719 bp)
Overview 1 RT 1: 77369-86333 bp Neighborhood of RT #1 [77369, 86335] RNase_Z rpsA RVT-Retrons GlnA3 Feature: gene Location: 77369-78283 bp Feature: domain Description: RNase_Z Location: 77384-78275 bp Feature: domain Description: RNase_Z Location: 77384-78275 bp Feature: gene Location: 78433-80226 bp Feature: domain Description: rpsA Location: 78511-80119 bp Feature: domain Description: rpsA Location: 7851 1 -801 1 9 bp Feature: gene Location: 80368-81480 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 80683-81232 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 80683-81 232 bp Feature: gene Location: 81687-83906 bp Feature: gene Location: 84146-86335 bp Feature: domain Description: GlnA3 Location: 84221-86333 bp Feature: domain Description: GlnA3 Location: 84221 -86333 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RNase_Z (TIGR02651), rpsA (TIGR00717), RVT-Retrons, GlnA3 (COG3968)

Seq: PDCW01000013.1 Bacteroides fragilis strain 12905 contig0013, whole genome shotgun sequence (145583 bp)
Overview 1 RT 1: 124901-129283 bp Neighborhood of RT #1 [124901, 129399] Cas2_I_II_III RVT-CRISPR Cas1_I-II-III Cmr6_III-B Cas_Cmr5 Feature: gene Location: 124901-125044 bp Feature: gene Location: 125468-125758 bp Feature: domain Description: Cas2_I_II_III Location: 125495-125705 bp Feature: domain Description: Cas2 _I_II_III Location: 12 5495-12 5705 bp Feature: gene Location: 125752-128022 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 125959-126565 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 12 5959-12 6565 bp Feature: domain Description: Cas1_I-II-III Location: 127024-127981 bp Feature: domain Description: Cas1_I-II-III Location: 12 702 4-12 7981 bp Feature: gene Location: 128042-128986 bp Feature: domain Description: Cmr6_III-B Location: 128198-128975 bp Feature: domain Description: Cmr6_III-B Location: 12 8198-12 8975 bp Feature: gene Location: 128989-129399 bp Feature: domain Description: Cas_Cmr5 Location: 129037-129283 bp Feature: domain Description: Cas_Cmr5 Location: 12 9037-12 92 83 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), RVT-CRISPR, Cas1_I-II-III (cl00656), Cmr6_III-B (cd09661), Cas_Cmr5 (pfam09701)

Seq: PDCW01000036.1 Bacteroides fragilis strain 12905 contig0036, whole genome shotgun sequence (49554 bp)
Overview 1 RT 1: 37806-40888 bp Neighborhood of RT #1 [37806, 40965] DUF4134 RVT-GII Intron_maturas2 HNHc DUF4134 DUF4133 Feature: gene Location: 37806-38084 bp Feature: domain Description: DUF4134 Location: 37866-38067 bp Feature: domain Description: DUF413 4 Location: 3 7866-3 8067 bp Feature: gene Location: 38096-38446 bp Feature: gene Location: 38626-40437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38890-39712 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 8890-3 9712 bp Feature: domain Description: Intron_maturas2 Location: 39901-40111 bp Feature: domain Description: Intron_maturas2 Location: 3 9901-40111 bp Feature: domain Description: HNHc Note: nucleases Location: 40261-40366 bp Feature: domain Description: HNHc Note: nucleases Location: 40261-403 66 bp Feature: gene Location: 40462-40656 bp Feature: domain Description: DUF4134 Location: 40552-40642 bp Feature: domain Description: DUF413 4 Location: 40552-40642 bp Feature: gene Location: 40669-40965 bp Feature: domain Description: DUF4133 Location: 40711-40888 bp Feature: domain Description: DUF413 3 Location: 40711-40888 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4134 (pfam13572), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF4133 (pfam13571)

Seq: PDCW01000043.1 Bacteroides fragilis strain 12905 contig0043, whole genome shotgun sequence (35199 bp)
Overview 1 RT 1: 5294-10210 bp Neighborhood of RT #1 [5294, 10749] AbiEii TraG-D_C RVT_N RVT-GII GIIM YWFCY Feature: gene Location: 5294-6310 bp Feature: domain Description: AbiEii Location: 5405-6233 bp Feature: domain Description: AbiEii Location: 54 05-6233 bp Feature: gene Location: 6354-7754 bp Feature: domain Description: TraG-D_C Location: 7128-7461 bp Feature: domain Description: TraG-D_C Location: 7128-74 61 bp Feature: gene Location: 7751-9406 bp Feature: domain Description: RVT_N Location: 7805-8048 bp Feature: domain Description: RVT_N Location: 7805-804 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8093-8738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8093-8738 bp Feature: domain Description: GIIM Note: maturase Location: 8789-9023 bp Feature: domain Description: GIIM Note: maturase Location: 8789-9023 bp Feature: gene Location: 9480-9797 bp Feature: gene Location: 10027-10749 bp Feature: domain Description: YWFCY Location: 10033-10210 bp Feature: domain Description: YWFCY Location: 10033-10210 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), TraG-D_C (pfam12696), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), YWFCY (pfam14293)