myRT

myRT report for GCA_002811085.1_Bfra_078320_1_v1

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Seq: PDCV01000015.1 Bacteroides fragilis strain 078320-1 contig0015, whole genome shotgun sequence (148379 bp)
Overview 1 RT 1: 36263-45228 bp Neighborhood of RT #1 [36263, 45230] RNase_Z rpsA RVT-Retrons GlnA3 Feature: gene Location: 36263-37177 bp Feature: domain Description: RNase_Z Location: 36278-37169 bp Feature: domain Description: RNase_Z Location: 36278-371 69 bp Feature: gene Location: 37327-39120 bp Feature: domain Description: rpsA Location: 37405-39013 bp Feature: domain Description: rpsA Location: 37405-3901 3 bp Feature: gene Location: 39262-40374 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 39577-40126 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 39577-401 26 bp Feature: gene Location: 40581-42800 bp Feature: gene Location: 43041-45230 bp Feature: domain Description: GlnA3 Location: 43116-45228 bp Feature: domain Description: GlnA3 Location: 431 1 6-45228 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RNase_Z (TIGR02651), rpsA (TIGR00717), RVT-Retrons, GlnA3 (COG3968)

Seq: PDCV01000029.1 Bacteroides fragilis strain 078320-1 contig0029, whole genome shotgun sequence (37829 bp)
Overview 1 RT 1: 32989-37822 bp Neighborhood of RT #1 [32989, 37827] SusD RVT-GII GIIM OMP_RagA_SusC Feature: gene Location: 32989-34593 bp Feature: domain Description: SusD Location: 33121-34306 bp Feature: domain Description: SusD Location: 3312 1-34306 bp Feature: gene Location: 34599-34892 bp Feature: gene Location: 35602-35898 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35605-35848 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35605-35848 bp Feature: gene Location: 36112-36363 bp Feature: domain Description: GIIM Note: maturase Location: 36133-36292 bp Feature: domain Description: GIIM Note: maturase Location: 36133-362 92 bp Feature: gene Location: 37465-37827 bp Feature: domain Description: OMP_RagA_SusC Location: 37636-37822 bp Feature: domain Description: OMP_RagA_SusC Location: 37636-3782 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SusD (NF033071), RVT-GII, GIIM (pfam08388), OMP_RagA_SusC (TIGR04056)