myRT

myRT report for GCA_002811725.1_ASM281172v1

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Seq: NTBF01000104.1 Escherichia coli strain SCEC020088 NODE_104_length_2344_cov_398.273, whole genome shotgun sequence (2344 bp)
Overview 1 RT 1: 2-2227 bp Neighborhood of RT #1 [2, 2262] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 2-145 bp Feature: gene Location: 595-2262 bp Feature: domain Description: RVT_N Location: 643-880 bp Feature: domain Description: RVT_N Location: 643-880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-1573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931 -1 573 bp Feature: domain Description: GIIM Note: maturase Location: 1624-1858 bp Feature: domain Description: GIIM Note: maturase Location: 1 624-1 858 bp Feature: domain Description: HNHc Note: nucleases Location: 2068-2227 bp Feature: domain Description: HNHc Note: nucleases Location: 2068-2227 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: NTBF01000013.1 Escherichia coli strain SCEC020088 NODE_13_length_121054_cov_80.0197, whole genome shotgun sequence (121054 bp)
Overview 1 RT 1: 46135-51414 bp Neighborhood of RT #1 [46135, 51530] RVT-UG7 PRK09692 Phage_int_SAM_5 INT_C_like_1 Feature: gene Location: 46135-46275 bp Feature: gene Location: 46385-47125 bp Feature: gene Location: 47122-48750 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 47530-47959 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 47530-47959 bp Feature: gene Location: 48743-49927 bp Feature: domain Description: PRK09692 Location: 48749-49904 bp Feature: domain Description: PRK09692 Location: 48749-49904 bp Feature: gene Location: 50196-51530 bp Feature: domain Description: Phage_int_SAM_5 Location: 50565-50802 bp Feature: domain Description: Phage_int_SAM_5 Location: 50565-50802 bp Feature: domain Description: INT_C_like_1 Location: 50898-51414 bp Feature: domain Description: INT_C_like_1 Location: 50898-51414 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG7, PRK09692 (Integrase; provisional), Phage_int_SAM_5 (pfam13102), INT_C_like_1 (cd01184)