myRT

myRT report for GCA_002813215.1_ASM281321v1

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Seq: PHUC01000002.1 Halomonas sp. es.049 Ga0070020_12, whole genome shotgun sequence (3766087 bp)
Overview 1 RT 1: 42330-50822 bp 2 RT 2: 799100-807730 bp 3 RT 3: 863538-869453 bp 4 RT 4: 1150701-1156140 bp 5 RT 5: 1468714-1475303 bp 6 RT 6: 2413799-2419716 bp 7 RT 7: 2578834-2584696 bp 8 RT 8: 2746485-2751247 bp 9 RT 9: 2912446-2917377 bp 10 RT 10: 3444186-3449573 bp Neighborhood of RT #1 [42330, 50827] dnaK PRK10767 RVT-GII GIIM RVT-GII GIIM DUF2218 DapB Neighborhood of RT #2 [799100, 807810] Arsenite_oxidase YiiD_C RVT-GII GIIM PRK11359 GAF_2 PRK10060 Tar Neighborhood of RT #3 [863538, 869455] PRK12421 PRK01117 RVT-GII GIIM PRK05986 PRK05412 Neighborhood of RT #4 [1150701, 1156169] PRK03757 RVT-GII GIIM MATE_like_2 AzgA Neighborhood of RT #5 [1468714, 1475305] umuC PRK10276 RVT-GII GIIM ihfA pheT Neighborhood of RT #6 [2413799, 2419754] RVT-GII GIIM PRK11183 LldP Neighborhood of RT #7 [2578834, 2584701] MhpC YqgV RVT-GII GIIM PRK08088 CaiB Neighborhood of RT #8 [2746485, 2751297] FadR RVT-GII GIIM YwnB RhaT Neighborhood of RT #9 [2912446, 2917415] YedE YedE RVT-GII GIIM OmpR PRK10337 Neighborhood of RT #10 [3444186, 3449578] PRK05254 upp RVT-GII GIIM UraA PRK14491 Feature: gene Location: 42330-44264 bp Feature: domain Description: dnaK Location: 42333-44250 bp Feature: domain Description: dnaK Location: 42333-44250 bp Feature: gene Location: 44392-45534 bp Feature: domain Description: PRK10767 Location: 44395-45520 bp Feature: domain Description: PRK1 0767 Location: 44395-45520 bp Feature: gene Location: 46063-47451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46387-47005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46387-47005 bp Feature: domain Description: GIIM Note: maturase Location: 47053-47272 bp Feature: domain Description: GIIM Note: maturase Location: 47053-47272 bp Feature: gene Location: 47988-49376 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48312-48930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4831 2-48930 bp Feature: domain Description: GIIM Note: maturase Location: 48978-49197 bp Feature: domain Description: GIIM Note: maturase Location: 48978-491 97 bp Feature: gene Location: 49532-49843 bp Feature: domain Description: DUF2218 Location: 49577-49835 bp Feature: domain Description: DUF221 8 Location: 49577-49835 bp Feature: gene Location: 49991-50827 bp Feature: domain Description: DapB Location: 50024-50822 bp Feature: domain Description: DapB Location: 50024-50822 bp Feature: gene Location: 799100-799660 bp Feature: domain Description: Arsenite_oxidase Location: 799115-799595 bp Feature: domain Description: Arsenite_oxidase Location: 7991 1 5-799595 bp Feature: gene Location: 799663-800181 bp Feature: domain Description: YiiD_C Location: 799744-800164 bp Feature: domain Description: YiiD_C Location: 799744-8001 64 bp Feature: gene Location: 800863-802251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 801187-801802 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 801 1 87-801 802 bp Feature: domain Description: GIIM Note: maturase Location: 801856-802072 bp Feature: domain Description: GIIM Note: maturase Location: 801 856-802072 bp Feature: gene Location: 802603-805638 bp Feature: domain Description: PRK11359 Location: 803479-803848 bp Feature: domain Description: PRK1 1 359 Location: 803479-803848 bp Feature: domain Description: GAF_2 Location: 803932-804334 bp Feature: domain Description: GAF_2 Location: 803932-804334 bp Feature: domain Description: PRK10060 Location: 804349-805609 bp Feature: domain Description: PRK1 0060 Location: 804349-805609 bp Feature: gene Location: 806179-807810 bp Feature: domain Description: Tar Location: 806515-807730 bp Feature: domain Description: Tar Location: 80651 5-807730 bp Feature: gene Location: 863538-864731 bp Feature: domain Description: PRK12421 Location: 863541-864699 bp Feature: domain Description: PRK1 2421 Location: 863541 -864699 bp Feature: gene Location: 864731-866026 bp Feature: domain Description: PRK01117 Location: 864740-866021 bp Feature: domain Description: PRK01 1 1 7 Location: 864740-866021 bp Feature: gene Location: 866566-867954 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 866890-867508 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 866890-867508 bp Feature: domain Description: GIIM Note: maturase Location: 867556-867775 bp Feature: domain Description: GIIM Note: maturase Location: 867556-867775 bp Feature: gene Location: 868086-868718 bp Feature: domain Description: PRK05986 Location: 868152-868716 bp Feature: domain Description: PRK05986 Location: 8681 52-86871 6 bp Feature: gene Location: 868898-869455 bp Feature: domain Description: PRK05412 Location: 868973-869453 bp Feature: domain Description: PRK0541 2 Location: 868973-869453 bp Feature: gene Location: 1150701-1151291 bp Feature: domain Description: PRK03757 Location: 1150716-1151289 bp Feature: domain Description: PRK03757 Location: 1 1 5071 6-1 1 51 289 bp Feature: gene Location: 1151310-1151444 bp Feature: gene Location: 1151811-1153199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1152135-1152753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 521 35-1 1 52753 bp Feature: domain Description: GIIM Note: maturase Location: 1152801-1153020 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 52801 -1 1 53020 bp Feature: gene Location: 1153360-1154670 bp Feature: domain Description: MATE_like_2 Location: 1153363-1154596 bp Feature: domain Description: MATE_like_2 Location: 1 1 53363-1 1 54596 bp Feature: gene Location: 1154688-1156169 bp Feature: domain Description: AzgA Location: 1154724-1156140 bp Feature: domain Description: AzgA Location: 1 1 54724-1 1 561 40 bp Feature: gene Location: 1468714-1469994 bp Feature: domain Description: umuC Location: 1468717-1469989 bp Feature: domain Description: umuC Location: 1 46871 7-1 469989 bp Feature: gene Location: 1469991-1470440 bp Feature: domain Description: PRK10276 Location: 1470045-1470417 bp Feature: domain Description: PRK1 0276 Location: 1 470045-1 47041 7 bp Feature: gene Location: 1470614-1472002 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1470938-1471556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 470938-1 471 556 bp Feature: domain Description: GIIM Note: maturase Location: 1471604-1471823 bp Feature: domain Description: GIIM Note: maturase Location: 1 471 604-1 471 823 bp Feature: gene Location: 1472559-1472921 bp Feature: domain Description: ihfA Location: 1472634-1472913 bp Feature: domain Description: ihfA Location: 1 472634-1 47291 3 bp Feature: gene Location: 1472924-1475305 bp Feature: domain Description: pheT Location: 1472927-1475303 bp Feature: domain Description: pheT Location: 1 472927-1 475303 bp Feature: gene Location: 2413799-2413978 bp Feature: gene Location: 2414144-2414365 bp Feature: gene Location: 2414732-2416120 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2415056-2415674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241 5056-241 5674 bp Feature: domain Description: GIIM Note: maturase Location: 2415722-2415941 bp Feature: domain Description: GIIM Note: maturase Location: 241 5722-241 5941 bp Feature: gene Location: 2416299-2417978 bp Feature: domain Description: PRK11183 Location: 2416311-2417973 bp Feature: domain Description: PRK1 1 1 83 Location: 241 631 1 -241 7973 bp Feature: gene Location: 2418051-2419754 bp Feature: domain Description: LldP Location: 2418066-2419716 bp Feature: domain Description: LldP Location: 241 8066-241 971 6 bp Feature: gene Location: 2578834-2579637 bp Feature: domain Description: MhpC Location: 2578858-2579620 bp Feature: domain Description: MhpC Location: 2578858-2579620 bp Feature: gene Location: 2579671-2579925 bp Feature: domain Description: YqgV Location: 2579680-2579863 bp Feature: domain Description: YqgV Location: 2579680-2579863 bp Feature: gene Location: 2580025-2581413 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2580349-2580967 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2580349-2580967 bp Feature: domain Description: GIIM Note: maturase Location: 2581015-2581234 bp Feature: domain Description: GIIM Note: maturase Location: 2581 01 5-2581 234 bp Feature: gene Location: 2581963-2583237 bp Feature: domain Description: PRK08088 Location: 2581969-2583232 bp Feature: domain Description: PRK08088 Location: 2581 969-2583232 bp Feature: gene Location: 2583448-2584701 bp Feature: domain Description: CaiB Location: 2583466-2584696 bp Feature: domain Description: CaiB Location: 2583466-2584696 bp Feature: gene Location: 2746485-2747261 bp Feature: domain Description: FadR Location: 2746524-2747196 bp Feature: domain Description: FadR Location: 2746524-27471 96 bp Feature: gene Location: 2747849-2748307 bp Feature: gene Location: 2748268-2749545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2748481-2749102 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2748481 -27491 02 bp Feature: domain Description: GIIM Note: maturase Location: 2749144-2749369 bp Feature: domain Description: GIIM Note: maturase Location: 27491 44-2749369 bp Feature: gene Location: 2749691-2750329 bp Feature: domain Description: YwnB Location: 2749694-2750327 bp Feature: domain Description: YwnB Location: 2749694-2750327 bp Feature: gene Location: 2750326-2751297 bp Feature: domain Description: RhaT Location: 2750377-2751247 bp Feature: domain Description: RhaT Location: 2750377-2751 247 bp Feature: gene Location: 2912446-2912907 bp Feature: domain Description: YedE Location: 2912473-2912890 bp Feature: domain Description: YedE Location: 291 2473-291 2890 bp Feature: gene Location: 2912904-2913308 bp Feature: domain Description: YedE Location: 2912922-2913291 bp Feature: domain Description: YedE Location: 291 2922-291 3291 bp Feature: gene Location: 2913863-2915251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2914187-2914805 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 291 41 87-291 4805 bp Feature: domain Description: GIIM Note: maturase Location: 2914856-2915072 bp Feature: domain Description: GIIM Note: maturase Location: 291 4856-291 5072 bp Feature: gene Location: 2915404-2916087 bp Feature: domain Description: OmpR Location: 2915407-2916058 bp Feature: domain Description: OmpR Location: 291 5407-291 6058 bp Feature: gene Location: 2916084-2917415 bp Feature: domain Description: PRK10337 Location: 2916087-2917377 bp Feature: domain Description: PRK1 0337 Location: 291 6087-291 7377 bp Feature: gene Location: 3444186-3444869 bp Feature: domain Description: PRK05254 Location: 3444198-3444852 bp Feature: domain Description: PRK05254 Location: 34441 98-3444852 bp Feature: gene Location: 3444965-3445594 bp Feature: domain Description: upp Location: 3444968-3445589 bp Feature: domain Description: upp Location: 3444968-3445589 bp Feature: gene Location: 3446112-3447500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3446436-3447054 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3446436-3447054 bp Feature: domain Description: GIIM Note: maturase Location: 3447102-3447321 bp Feature: domain Description: GIIM Note: maturase Location: 34471 02-3447321 bp Feature: gene Location: 3447610-3448842 bp Feature: domain Description: UraA Location: 3447634-3448831 bp Feature: domain Description: UraA Location: 3447634-3448831 bp Feature: gene Location: 3449033-3449578 bp Feature: domain Description: PRK14491 Location: 3449063-3449573 bp Feature: domain Description: PRK1 4491 Location: 3449063-3449573 bp Sorry, your 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Associated domains:myRT dnaK (PRK00290), PRK10767 (chaperone protein DnaJ; Provisional), RVT-GII, GIIM (pfam08388), DUF2218 (pfam09981), DapB (COG0289), Arsenite_oxidase, YiiD_C (pfam09500), PRK11359 (cyclic-di-GMP phosphodiesterase; Provisional), GAF_2 (pfam13185)
PRK10060 (cyclic di-GMP phosphodiesterase), Tar (COG0840), PRK12421 (ATP phosphoribosyltransferase regulatory subunit; Provisional), PRK01117 (adenylosuccinate synthetase; Provisional), PRK05986 (cob(I)yrinic acid a,c-diamide adenosyltransferase), PRK05412 (putative nucleotide-binding protein; Reviewed), PRK03757 (YceI family protein), MATE_like_2 (cd13149), AzgA (COG2252), umuC (PRK03609)
PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), ihfA (PRK00285), pheT (PRK09616), PRK11183 (D-lactate dehydrogenase; Provisional), LldP (COG1620), MhpC (COG0596), YqgV (COG0011), PRK08088 (4-aminobutyrate--2-oxoglutarate transaminase), CaiB (COG1804), FadR (COG2186)
YwnB (COG2910), RhaT (TIGR00776), YedE (COG2391), OmpR (COG0745), PRK10337 (sensor protein QseC; Provisional), PRK05254 (uracil-DNA glycosylase; Provisional), upp (TIGR01091), UraA (COG2233), PRK14491 (putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional)