myRT

myRT report for GCA_002814175.1_ASM281417v1

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Seq: PDDG01000001.1 Clostridium sp. HMb25 unitig_0, whole genome shotgun sequence (3429461 bp)
Overview 1 RT 1: 370516-376745 bp 2 RT 2: 462226-466122 bp 3 RT 3: 1049173-1052473 bp 4 RT 4: 1213574-1222051 bp 5 RT 5: 1418199-1422771 bp 6 RT 6: 2128326-2132765 bp 7 RT 7: 3207062-3211740 bp Neighborhood of RT #1 [370516, 376804] FeS_nifS MATE_SpoVB_like RVT-GII GIIM DctQ Neighborhood of RT #2 [462226, 466122] RVT-DGRs Neighborhood of RT #3 [1049173, 1052473] Phage_XkdX RVT-DGRs Neighborhood of RT #4 [1213574, 1222051] HtpG RVT-UG24 Neighborhood of RT #5 [1418199, 1422771] HTH_ARAC AraC_E_bind NESP55 Peptidase_M15_4 RVT-GII GIIM Neighborhood of RT #6 [2128326, 2132860] Avd_like RVT-DGRs ChiA1_BD ChiA1_BD Neighborhood of RT #7 [3207062, 3211745] IclR RVT-GII GIIM CdsB Feature: gene Location: 370516-371709 bp Feature: domain Description: FeS_nifS Location: 370531-371668 bp Feature: domain Description: FeS_nifS Location: 370531 -371 668 bp Feature: gene Location: 372031-373533 bp Feature: domain Description: MATE_SpoVB_like Location: 372064-373321 bp Feature: domain Description: MATE_SpoVB_like Location: 372064-373321 bp Feature: gene Location: 373624-375015 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 373939-374563 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 373939-374563 bp Feature: domain Description: GIIM Note: maturase Location: 374620-374830 bp Feature: domain Description: GIIM Note: maturase Location: 374620-374830 bp Feature: gene Location: 375273-375437 bp Feature: gene Location: 375620-376804 bp Feature: domain Description: DctQ Location: 375767-376745 bp Feature: domain Description: DctQ Location: 375767-376745 bp Feature: gene Location: 462226-462498 bp Feature: gene Location: 462550-462777 bp Feature: gene Location: 463203-464405 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 463494-464109 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 463494-4641 09 bp Feature: gene Location: 464546-464674 bp Feature: gene Location: 464803-466122 bp Feature: gene Location: 1049173-1049325 bp Feature: domain Description: Phage_XkdX Location: 1049194-1049305 bp Feature: domain Description: Phage_XkdX Location: 1 0491 94-1 049305 bp Feature: gene Location: 1049327-1049641 bp Feature: gene Location: 1049478-1050776 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1049742-1050369 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 049742-1 050369 bp Feature: gene Location: 1050859-1051053 bp Feature: gene Location: 1051235-1052473 bp Feature: gene Location: 1213574-1213720 bp Feature: gene Location: 1213776-1216856 bp Feature: domain Description: HtpG Location: 1214865-1215402 bp Feature: domain Description: HtpG Location: 1 21 4865-1 21 5402 bp Feature: gene Location: 1217156-1220626 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 1217696-1218152 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 1 21 7696-1 21 81 52 bp Feature: gene Location: 1220628-1221173 bp Feature: gene Location: 1221170-1222051 bp Feature: gene Location: 1418199-1419230 bp Feature: domain Description: HTH_ARAC Location: 1418394-1418640 bp Feature: domain Description: HTH_ARAC Location: 1 41 8394-1 41 8640 bp Feature: domain Description: AraC_E_bind Location: 1418766-1419219 bp Feature: domain Description: AraC_E_bind Location: 1 41 8766-1 41 921 9 bp Feature: gene Location: 1419211-1420266 bp Feature: domain Description: NESP55 Location: 1419436-1419586 bp Feature: domain Description: NESP55 Location: 1 41 9436-1 41 9586 bp Feature: domain Description: Peptidase_M15_4 Location: 1420009-1420252 bp Feature: domain Description: Peptidase_M1 5_4 Location: 1 420009-1 420252 bp Feature: gene Location: 1420718-1422016 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1420976-1421663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 420976-1 421 663 bp Feature: domain Description: GIIM Note: maturase Location: 1421741-1421948 bp Feature: domain Description: GIIM Note: maturase Location: 1 421 741 -1 421 948 bp Feature: gene Location: 1422136-1422492 bp Feature: gene Location: 1422550-1422771 bp Feature: gene Location: 2128326-2128673 bp Feature: gene Location: 2128642-2128995 bp Feature: domain Description: Avd_like Location: 2128693-2128978 bp Feature: domain Description: Avd_like Location: 21 28693-21 28978 bp Feature: gene Location: 2129343-2130569 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2129616-2130261 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 21 2961 6-21 30261 bp Feature: gene Location: 2130762-2132351 bp Feature: gene Location: 2132333-2132860 bp Feature: domain Description: ChiA1_BD Location: 2132501-2132630 bp Feature: domain Description: ChiA1 _BD Location: 21 32501 -21 32630 bp Feature: domain Description: ChiA1_BD Location: 2132687-2132765 bp Feature: domain Description: ChiA1 _BD Location: 21 32687-21 32765 bp Feature: gene Location: 3207062-3207832 bp Feature: domain Description: IclR Location: 3207089-3207806 bp Feature: domain Description: IclR Location: 3207089-3207806 bp Feature: gene Location: 3208099-3208260 bp Feature: gene Location: 3208574-3209872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3208832-3209519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3208832-320951 9 bp Feature: domain Description: GIIM Note: maturase Location: 3209597-3209804 bp Feature: domain Description: GIIM Note: maturase Location: 3209597-3209804 bp Feature: gene Location: 3209942-3210229 bp Feature: gene Location: 3210465-3211745 bp Feature: domain Description: CdsB Location: 3210483-3211740 bp Feature: domain Description: CdsB Location: 321 0483-321 1 740 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FeS_nifS (TIGR03402), MATE_SpoVB_like (cd13124), RVT-GII, GIIM (pfam08388), DctQ (pfam04290), RVT-DGRs, Phage_XkdX (pfam09693), HtpG (COG0326), RVT-UG24, HTH_ARAC (smart00342)
AraC_E_bind (smart00871), NESP55 (pfam06390), Peptidase_M15_4 (pfam13539), Avd_like (cd16376), ChiA1_BD (cd12214), IclR (pfam01614), CdsB (COG3681)

Seq: PDDG01000002.1 Clostridium sp. HMb25 unitig_7, whole genome shotgun sequence (1925896 bp)
Overview 1 RT 1: 227472-230136 bp 2 RT 2: 1750888-1755746 bp Neighborhood of RT #1 [227472, 230153] Phage_XkdX RVT-DGRs Phage_holin_5_2 Neighborhood of RT #2 [1750888, 1755748] MviM MviM LysR RVT-Retrons YuiF Feature: gene Location: 227472-227615 bp Feature: domain Description: Phage_XkdX Location: 227493-227610 bp Feature: domain Description: Phage_XkdX Location: 2 2 7493-2 2 7610 bp Feature: gene Location: 227612-228097 bp Feature: gene Location: 228308-229504 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 228503-229220 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 2 8503-2 2 92 2 0 bp Feature: gene Location: 229507-229845 bp Feature: gene Location: 229857-230153 bp Feature: domain Description: Phage_holin_5_2 Location: 229905-230136 bp Feature: domain Description: Phage_holin_5_2 Location: 2 2 9905-2 30136 bp Feature: gene Location: 1750888-1752072 bp Feature: domain Description: MviM Location: 1750909-1751206 bp Feature: domain Description: MviM Location: 1750909-17512 06 bp Feature: domain Description: MviM Location: 1751281-1752064 bp Feature: domain Description: MviM Location: 17512 81-1752 064 bp Feature: gene Location: 1752393-1753337 bp Feature: domain Description: LysR Location: 1752432-1753290 bp Feature: domain Description: LysR Location: 1752 432 -17532 90 bp Feature: gene Location: 1753385-1754371 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1753550-1754105 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1753550-1754105 bp Feature: gene Location: 1754399-1754611 bp Feature: gene Location: 1754669-1755748 bp Feature: domain Description: YuiF Location: 1754702-1755746 bp Feature: domain Description: YuiF Location: 1754702 -1755746 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_XkdX (pfam09693), RVT-DGRs, Phage_holin_5_2 (pfam16079), MviM (COG0673), LysR (COG0583), RVT-Retrons, YuiF (COG2056)