myRT

myRT report for GCA_002835515.1_ASM283551v1

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Seq: PIZL01000001.1 Vibrio sp. vnigr-6D03 17_S17_L001_R1_001__paired__contig_1, whole genome shotgun sequence (736258 bp)
Overview 1 RT 1: 635589-642109 bp Neighborhood of RT #1 [635589, 642109] MA SpoIVFB RVT-Retrons Feature: gene Location: 635589-636635 bp Feature: domain Description: MA Location: 635889-636618 bp Feature: domain Description: MA Location: 635889-63661 8 bp Feature: gene Location: 636993-638072 bp Feature: domain Description: SpoIVFB Location: 637221-637998 bp Feature: domain Description: SpoIVFB Location: 637221 -637998 bp Feature: gene Location: 638108-640006 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 638729-639344 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 638729-639344 bp Feature: gene Location: 640052-640183 bp Feature: gene Location: 640454-642109 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MA (smart00283), SpoIVFB (COG1994), RVT-Retrons

Seq: PIZL01000016.1 Vibrio sp. vnigr-6D03 17_S17_L001_R1_001__paired__contig_16, whole genome shotgun sequence (285732 bp)
Overview 1 RT 1: 33976-40628 bp Neighborhood of RT #1 [33976, 40660] TIGR02646 SEL1 COG3950 RVT-Retrons Nudix_hydro Nudix_Hydrolase_12 QdoI HTH_18 Feature: gene Location: 33976-34767 bp Feature: domain Description: TIGR02646 Location: 34045-34582 bp Feature: domain Description: TIGR02 646 Location: 34045-34582 bp Feature: gene Location: 34754-36367 bp Feature: domain Description: SEL1 Location: 34823-34901 bp Feature: domain Description: SEL1 Location: 3482 3-34901 bp Feature: domain Description: COG3950 Location: 34937-36284 bp Feature: domain Description: COG3950 Location: 34937-362 84 bp Feature: gene Location: 36368-37315 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36473-37070 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36473-37070 bp Feature: gene Location: 38590-39795 bp Feature: domain Description: Nudix_hydro Location: 38599-38821 bp Feature: domain Description: Nudix_hydro Location: 38599-3882 1 bp Feature: domain Description: Nudix_Hydrolase_12 Location: 38866-39235 bp Feature: domain Description: Nudix_Hydrolase_12 Location: 38866-392 35 bp Feature: gene Location: 39818-40660 bp Feature: domain Description: QdoI Location: 39860-40109 bp Feature: domain Description: QdoI Location: 39860-40109 bp Feature: domain Description: HTH_18 Location: 40400-40628 bp Feature: domain Description: HTH_18 Location: 40400-4062 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), SEL1 (smart00671), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, Nudix_hydro (pfam18290), Nudix_Hydrolase_12 (cd04670), QdoI (COG1917), HTH_18 (pfam12833)

Seq: PIZL01000019.1 Vibrio sp. vnigr-6D03 17_S17_L001_R1_001__paired__contig_19, whole genome shotgun sequence (381047 bp)
Overview 1 RT 1: 368814-373496 bp Neighborhood of RT #1 [368814, 373496] T5orf172 RVT-UG12 Feature: gene Location: 368814-369809 bp Feature: gene Location: 369806-370609 bp Feature: domain Description: T5orf172 Location: 370313-370541 bp Feature: domain Description: T5orf172 Location: 3 703 13 -3 70541 bp Feature: gene Location: 370873-372483 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 371242-371668 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 3 71242-3 71668 bp Feature: gene Location: 372713-373285 bp Feature: gene Location: 373350-373496 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT T5orf172 (smart00974), RVT-UG12

Seq: PIZL01000007.1 Vibrio sp. vnigr-6D03 17_S17_L001_R1_001__paired__contig_7, whole genome shotgun sequence (197424 bp)
Overview 1 RT 1: 40525-44724 bp Neighborhood of RT #1 [40525, 44762] RVT-UG4 BtuF Feature: gene Location: 40525-41487 bp Feature: gene Location: 41788-43038 bp Feature: gene Location: 43126-43548 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 43129-43282 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 4 3129-4 3282 bp Feature: gene Location: 43701-43856 bp Feature: gene Location: 43947-44762 bp Feature: domain Description: BtuF Location: 43977-44724 bp Feature: domain Description: BtuF Location: 4 3977-4 4 724 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, BtuF (cd01144)