myRT

myRT report for GCA_002835805.1_ASM283580v1

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Seq: PISE01000003.1 Bacillus nealsonii strain FO-92 contig_3, whole genome shotgun sequence (307322 bp)
Overview 1 RT 1: 126307-136503 bp Neighborhood of RT #1 [126307, 136508] addB_Gpos addA_Gpos RVT-GII HNHc addA_Gpos gerPA Feature: gene Location: 126307-129792 bp Feature: domain Description: addB_Gpos Location: 126310-129784 bp Feature: domain Description: addB_Gpos Location: 1 2631 0-1 29784 bp Feature: gene Location: 129789-131060 bp Feature: domain Description: addA_Gpos Location: 129831-131043 bp Feature: domain Description: addA_Gpos Location: 1 29831 -1 31 043 bp Feature: gene Location: 131750-133627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 132086-132821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 32086-1 32821 bp Feature: domain Description: HNHc Note: nucleases Location: 133370-133514 bp Feature: domain Description: HNHc Note: nucleases Location: 1 33370-1 3351 4 bp Feature: gene Location: 133641-136229 bp Feature: domain Description: addA_Gpos Location: 133734-136209 bp Feature: domain Description: addA_Gpos Location: 1 33734-1 36209 bp Feature: gene Location: 136290-136508 bp Feature: domain Description: gerPA Location: 136293-136503 bp Feature: domain Description: gerPA Location: 1 36293-1 36503 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT addB_Gpos (TIGR02773), addA_Gpos (TIGR02785), RVT-GII, HNHc (smart00507), gerPA (pfam10676)

Seq: PISE01000034.1 Bacillus nealsonii strain FO-92 contig_34, whole genome shotgun sequence (52378 bp)
Overview 1 RT 1: 41110-45962 bp Neighborhood of RT #1 [41110, 45982] rpmG HTH_OrfB_IS605 RVT-GII KOG4768 HNHc Y1_Tnp InsQ Feature: gene Location: 41110-41259 bp Feature: domain Description: rpmG Location: 41113-41257 bp Feature: domain Description: rpmG Location: 41113-412 57 bp Feature: gene Location: 41458-41769 bp Feature: domain Description: HTH_OrfB_IS605 Location: 41461-41578 bp Feature: domain Description: HTH_OrfB_IS605 Location: 41461-41578 bp Feature: gene Location: 42435-44234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42732-43428 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 732 -4342 8 bp Feature: domain Description: KOG4768 Location: 43518-43668 bp Feature: domain Description: KOG4768 Location: 43518-43668 bp Feature: domain Description: HNHc Note: nucleases Location: 43986-44121 bp Feature: domain Description: HNHc Note: nucleases Location: 43986-4412 1 bp Feature: gene Location: 44325-44777 bp Feature: domain Description: Y1_Tnp Location: 44493-44775 bp Feature: domain Description: Y1_Tnp Location: 44493-44775 bp Feature: gene Location: 44855-45982 bp Feature: domain Description: InsQ Location: 44885-45962 bp Feature: domain Description: InsQ Location: 44885-45962 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rpmG (PRK00595), HTH_OrfB_IS605 (pfam12323), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), HNHc (smart00507), Y1_Tnp (pfam01797), InsQ (COG0675)

Seq: PISE01000074.1 Bacillus nealsonii strain FO-92 contig_79, whole genome shotgun sequence (16585 bp)
Overview 1 RT 1: 75-5357 bp Neighborhood of RT #1 [75, 5365] HTH_17 RVT-GII HNHc MRJP CotF Feature: gene Location: 75-323 bp Feature: gene Location: 404-592 bp Feature: domain Description: HTH_17 Location: 431-572 bp Feature: domain Description: HTH_17 Location: 43 1-572 bp Feature: gene Location: 1608-3380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1866-2562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1866-2562 bp Feature: domain Description: HNHc Note: nucleases Location: 3117-3258 bp Feature: domain Description: HNHc Note: nucleases Location: 3 117-3 258 bp Feature: gene Location: 3797-4912 bp Feature: domain Description: MRJP Location: 4055-4835 bp Feature: domain Description: MRJP Location: 4055-483 5 bp Feature: gene Location: 5066-5365 bp Feature: domain Description: CotF Location: 5069-5357 bp Feature: domain Description: CotF Location: 5069-53 57 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), MRJP (pfam03022), HTH_17 (pfam12728)

Seq: PISE01000009.1 Bacillus nealsonii strain FO-92 contig_9, whole genome shotgun sequence (51997 bp)
Overview 1 RT 1: 15231-20699 bp Neighborhood of RT #1 [15231, 20713] RVT-GII polC Feature: gene Location: 15231-15359 bp Feature: gene Location: 15445-15654 bp Feature: gene Location: 15749-16831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15830-16526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15830-16526 bp Feature: gene Location: 16845-17060 bp Feature: gene Location: 17780-20713 bp Feature: domain Description: polC Location: 17807-20699 bp Feature: domain Description: polC Location: 17807-20699 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, polC (TIGR00354)