myRT

myRT report for GCA_002835995.1_ASM283599v1

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Seq: PJBZ01000212.1 Psychromonas sp. Urea-02u-13 contig179, whole genome shotgun sequence (978 bp)
Overview 1 RT 1: 2-839 bp Neighborhood of RT #1 [2, 976] RVT-GII GIIM Feature: gene Location: 2-976 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8-578 bp Feature: domain Description: GIIM Note: maturase Location: 620-839 bp Feature: domain Description: GIIM Note: maturase Location: 620-839 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PJBZ01000048.1 Psychromonas sp. Urea-02u-13 contig25, whole genome shotgun sequence (56515 bp)
Overview 1 RT 1: 46470-55592 bp Neighborhood of RT #1 [46470, 55927] PRK05560 PRK05134 RVT-UG2 YjjU HTH_Cfa HTH_Cfa-like_unk Methyltransf_25 Feature: gene Location: 46470-49190 bp Feature: domain Description: PRK05560 Location: 46488-49068 bp Feature: domain Description: PRK05560 Location: 46488-49068 bp Feature: gene Location: 49611-50345 bp Feature: domain Description: PRK05134 Location: 49650-50337 bp Feature: domain Description: PRK05134 Location: 49650-50337 bp Feature: gene Location: 50459-51742 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 50666-51446 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 50666-51446 bp Feature: gene Location: 52903-53823 bp Feature: domain Description: YjjU Location: 52969-53797 bp Feature: domain Description: YjjU Location: 52 969-53797 bp Feature: gene Location: 54749-55927 bp Feature: domain Description: HTH_Cfa Location: 54752-55055 bp Feature: domain Description: HTH_Cfa Location: 54752 -55055 bp Feature: domain Description: HTH_Cfa-like_unk Location: 55058-55175 bp Feature: domain Description: HTH_Cfa-like_unk Location: 55058-55175 bp Feature: domain Description: Methyltransf_25 Location: 55310-55592 bp Feature: domain Description: Methyltransf_2 5 Location: 55310-55592 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05560 (DNA gyrase subunit A; Validated), PRK05134 (bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG), RVT-UG2, YjjU (COG4667), HTH_Cfa (cd04789), HTH_Cfa-like_unk (cd04790), Methyltransf_25 (pfam13649)

Seq: PJBZ01000041.1 Psychromonas sp. Urea-02u-13 contig3, whole genome shotgun sequence (149926 bp)
Overview 1 RT 1: 151-9703 bp Neighborhood of RT #1 [151, 9703] dnaG RVT-UNC Feature: gene Location: 151-300 bp Feature: gene Location: 454-1353 bp Feature: gene Location: 1331-9127 bp Feature: domain Description: dnaG Location: 1409-2483 bp Feature: domain Description: dnaG Location: 1409-2483 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 3209-3827 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 3 209-3 827 bp Feature: gene Location: 9363-9548 bp Feature: gene Location: 9575-9703 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dnaG (TIGR01391), RVT-UG10/RVT-UG19/RVT-UG1/RVT-UG6(RVT-UNC)

Seq: PJBZ01000064.1 Psychromonas sp. Urea-02u-13 contig35, whole genome shotgun sequence (44343 bp)
Overview 1 RT 1: 742-6498 bp Neighborhood of RT #1 [742, 6506] PRK13535 Cls RVT-GII PRK12335 PRK11823 Feature: gene Location: 742-1794 bp Feature: domain Description: PRK13535 Location: 751-1747 bp Feature: domain Description: PRK13535 Location: 751-174 7 bp Feature: gene Location: 2034-3566 bp Feature: domain Description: Cls Location: 2205-3549 bp Feature: domain Description: Cls Location: 2205-354 9 bp Feature: gene Location: 4046-4249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4049-4214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 04 9-4 214 bp Feature: gene Location: 4573-5091 bp Feature: domain Description: PRK12335 Location: 4582-5032 bp Feature: domain Description: PRK12335 Location: 4 582-5032 bp Feature: gene Location: 5091-6506 bp Feature: domain Description: PRK11823 Location: 5103-6498 bp Feature: domain Description: PRK11823 Location: 5103-64 98 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13535 (erythrose 4-phosphate dehydrogenase; Provisional), Cls (COG1502), RVT-GII, PRK12335 (tellurite resistance protein TehB; Provisional), PRK11823 (DNA repair protein RadA; Provisional)

Seq: PJBZ01000069.1 Psychromonas sp. Urea-02u-13 contig9, whole genome shotgun sequence (122042 bp)
Overview 1 RT 1: 16240-21676 bp Neighborhood of RT #1 [16240, 21681] AraC_E_bind RVT-Retrons ABC_ATPase ABC_ATPase PRK11394 Feature: gene Location: 16240-16833 bp Feature: domain Description: AraC_E_bind Location: 16345-16813 bp Feature: domain Description: AraC_E_bind Location: 16345 -16813 bp Feature: gene Location: 17050-17280 bp Feature: gene Location: 18549-19538 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 18696-19266 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 18696-19266 bp Feature: gene Location: 19541-20902 bp Feature: domain Description: ABC_ATPase Location: 19598-19697 bp Feature: domain Description: ABC_ATPase Location: 195 98-19697 bp Feature: domain Description: ABC_ATPase Location: 20090-20300 bp Feature: domain Description: ABC_ATPase Location: 20090-20300 bp Feature: gene Location: 21001-21681 bp Feature: domain Description: PRK11394 Location: 21097-21676 bp Feature: domain Description: PRK11394 Location: 21097-21676 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AraC_E_bind (smart00871), RVT-Retrons, ABC_ATPase (pfam09818), PRK11394 (23S rRNA pseudouridine(2457) synthase RluE)