myRT

myRT report for GCA_002836005.1_ASM283600v1

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Seq: PJBY01000101.1 Psychrobacter sp. Sarcosine-3u-12 contig4, whole genome shotgun sequence (149115 bp)
Overview 1 RT 1: 63696-70048 bp Neighborhood of RT #1 [63696, 70048] ZipA_C ligA RVT-UG15 Feature: gene Location: 63696-64712 bp Feature: domain Description: ZipA_C Location: 64347-64692 bp Feature: domain Description: ZipA_C Location: 64347-64692 bp Feature: gene Location: 64997-67087 bp Feature: domain Description: ligA Location: 65087-67082 bp Feature: domain Description: ligA Location: 65087-67082 bp Feature: gene Location: 67164-68738 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 67659-68052 bp Feature: RT Description: RVT-UG1 5 Note: UG1 5 RT Location: 67659-68052 bp Feature: gene Location: 68815-69393 bp Feature: gene Location: 69617-70048 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ZipA_C (smart00771), ligA (PRK14351), RVT-UG15

Seq: PJBY01000005.1 Psychrobacter sp. Sarcosine-3u-12 contig49, whole genome shotgun sequence (16731 bp)
Overview 1 RT 1: 1257-10318 bp Neighborhood of RT #1 [1257, 10318] PHA02517 HTH_XRE RVT-UG8 RVT-UG3 COG0610 Feature: gene Location: 1257-2075 bp Feature: domain Description: PHA02517 Location: 1272-2067 bp Feature: domain Description: PHA02 517 Location: 12 72 -2 067 bp Feature: gene Location: 2434-2643 bp Feature: domain Description: HTH_XRE Location: 2467-2638 bp Feature: domain Description: HTH_XRE Location: 2 467-2 638 bp Feature: gene Location: 2827-4803 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 3370-3817 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 3370-3817 bp Feature: gene Location: 4815-6059 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 5106-5601 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 5106-5601 bp Feature: gene Location: 6207-9389 bp Feature: domain Description: COG0610 Location: 6222-9276 bp Feature: domain Description: COG0610 Location: 62 2 2 -92 76 bp Feature: gene Location: 9467-10318 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), HTH_XRE (smart00530), RVT-UG8, RVT-UG3, COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases )

Seq: PJBY01000016.1 Psychrobacter sp. Sarcosine-3u-12 contig60, whole genome shotgun sequence (4931 bp)
Overview 1 RT 1: 3-3107 bp Neighborhood of RT #1 [3, 3107] RVT-Retrons EamA EamA Feature: gene Location: 3-935 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 138-837 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13 8-83 7 bp Feature: gene Location: 1915-2823 bp Feature: domain Description: EamA Location: 1936-2326 bp Feature: domain Description: EamA Location: 193 6-23 26 bp Feature: domain Description: EamA Location: 2401-2788 bp Feature: domain Description: EamA Location: 2401-2788 bp Feature: gene Location: 2874-3107 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, EamA (pfam00892)