myRT

myRT report for GCA_002836035.1_ASM283603v1

Download annotations/find similar RTs

Seq: PJBT01000179.1 Halomonas sp. MES3-P3E contig191, whole genome shotgun sequence (226 bp)
Overview 1 RT 1: 1-214 bp Neighborhood of RT #1 [1, 225] RVT-GII Feature: gene Location: 1-225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40-214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40-21 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PJBT01000031.1 Halomonas sp. MES3-P3E contig43, whole genome shotgun sequence (22216 bp)
Overview 1 RT 1: 11830-16040 bp Neighborhood of RT #1 [11830, 16075] ERF RVT-GII GIIM RVT-GII COG4643 Toprim_3 Feature: gene Location: 11830-12483 bp Feature: domain Description: ERF Location: 11866-12235 bp Feature: domain Description: ERF Location: 11866-12 2 35 bp Feature: gene Location: 12662-12892 bp Feature: gene Location: 13051-13863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13054-13417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13054-13417 bp Feature: domain Description: GIIM Note: maturase Location: 13465-13684 bp Feature: domain Description: GIIM Note: maturase Location: 13465-13684 bp Feature: gene Location: 13838-14449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14162-14360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14162 -14360 bp Feature: gene Location: 14586-14834 bp Feature: gene Location: 14966-16075 bp Feature: domain Description: COG4643 Location: 15008-15326 bp Feature: domain Description: COG4643 Location: 15008-1532 6 bp Feature: domain Description: Toprim_3 Location: 15737-16040 bp Feature: domain Description: Toprim_3 Location: 15737-16040 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ERF (pfam04404), RVT-GII, GIIM (pfam08388), COG4643 (Uncharacterized domain associated with phage/plasmid primase ), Toprim_3 (pfam13362)

Seq: PJBT01000038.1 Halomonas sp. MES3-P3E contig50, whole genome shotgun sequence (15401 bp)
Overview 1 RT 1: 2-3351 bp Neighborhood of RT #1 [2, 3365] RVT-GII GIIM KfrA_N SMC_prok_A PHA02517 Feature: gene Location: 2-1075 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41-653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41-653 bp Feature: domain Description: GIIM Note: maturase Location: 716-935 bp Feature: domain Description: GIIM Note: maturase Location: 716-93 5 bp Feature: gene Location: 1411-2439 bp Feature: domain Description: KfrA_N Location: 1438-1777 bp Feature: domain Description: KfrA_N Location: 143 8-1777 bp Feature: domain Description: SMC_prok_A Location: 2014-2428 bp Feature: domain Description: SMC_prok_A Location: 2014-2428 bp Feature: gene Location: 2847-3365 bp Feature: domain Description: PHA02517 Location: 2853-3351 bp Feature: domain Description: PHA02517 Location: 2853 -3 3 51 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), KfrA_N (pfam11740), SMC_prok_A (TIGR02169), PHA02517 (putative transposase OrfB; Reviewed)

Seq: PJBT01000061.1 Halomonas sp. MES3-P3E contig73, whole genome shotgun sequence (6584 bp)
Overview 1 RT 1: 2536-6430 bp Neighborhood of RT #1 [2536, 6492] FI FI RVT-DGRs DUF1566 Avd_like Feature: gene Location: 2536-4116 bp Feature: domain Description: FI Location: 2602-2992 bp Feature: domain Description: FI Location: 2602-2992 bp Feature: domain Description: FI Location: 3055-4108 bp Feature: domain Description: FI Location: 3055-4 108 bp Feature: gene Location: 4186-4707 bp Feature: gene Location: 4704-6107 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5184-5865 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5184 -5865 bp Feature: gene Location: 5809-5982 bp Feature: domain Description: DUF1566 Location: 5827-5974 bp Feature: domain Description: DUF1566 Location: 5827-5974 bp Feature: gene Location: 6100-6492 bp Feature: domain Description: Avd_like Location: 6124-6430 bp Feature: domain Description: Avd_like Location: 6124 -64 30 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FI (PHA02560), RVT-DGRs, DUF1566 (pfam07603), Avd_like (cd16376)

Seq: PJBT01000082.1 Halomonas sp. MES3-P3E contig94, whole genome shotgun sequence (2093 bp)
Overview 1 RT 1: 79-2092 bp Neighborhood of RT #1 [79, 2092] RVT-GII GIIM Feature: gene Location: 79-1356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 292-910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 292-910 bp Feature: domain Description: GIIM Note: maturase Location: 958-1183 bp Feature: domain Description: GIIM Note: maturase Location: 95 8-1183 bp Feature: gene Location: 1374-1550 bp Feature: gene Location: 1778-2092 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)