myRT

myRT report for GCA_002836055.1_ASM283605v1

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Seq: PJBS01000126.1 Psychroflexus sp. MES1-P1E contig115, whole genome shotgun sequence (6655 bp)
Overview 1 RT 1: 1-1231 bp Neighborhood of RT #1 [1, 1231] RVT-GII RVT-GII PHA02517 Feature: gene Location: 1-276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 211-274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 1 -274 bp Feature: gene Location: 292-504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 295-493 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 295-493 bp Feature: gene Location: 489-761 bp Feature: domain Description: PHA02517 Location: 513-726 bp Feature: domain Description: PHA0251 7 Location: 51 3-726 bp Feature: gene Location: 887-1231 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PHA02517 (putative transposase OrfB; Reviewed)

Seq: PJBS01000142.1 Psychroflexus sp. MES1-P1E contig131, whole genome shotgun sequence (5589 bp)
Overview 1 RT 1: 97-5558 bp Neighborhood of RT #1 [97, 5587] RVT-GII GIIM RVT-GII GIIM AmpC HTH_ARAC Feature: gene Location: 97-1278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 211-826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 11-82 6 bp Feature: domain Description: GIIM Note: maturase Location: 898-1111 bp Feature: domain Description: GIIM Note: maturase Location: 898-1111 bp Feature: gene Location: 1572-1709 bp Feature: gene Location: 1916-3169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2129-2786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 12 9-2 786 bp Feature: domain Description: GIIM Note: maturase Location: 2870-3092 bp Feature: domain Description: GIIM Note: maturase Location: 2 870-3092 bp Feature: gene Location: 3274-4944 bp Feature: domain Description: AmpC Location: 4045-4879 bp Feature: domain Description: AmpC Location: 4045-4879 bp Feature: gene Location: 5030-5587 bp Feature: domain Description: HTH_ARAC Location: 5306-5558 bp Feature: domain Description: HTH_ARAC Location: 5306-5558 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), AmpC (COG1680), HTH_ARAC (smart00342)

Seq: PJBS01000198.1 Psychroflexus sp. MES1-P1E contig168, whole genome shotgun sequence (3917 bp)
Overview 1 RT 1: 2-3631 bp Neighborhood of RT #1 [2, 3651] RVT-GII GIIM Acyl_transf_3 LytTR Feature: gene Location: 2-136 bp Feature: gene Location: 161-1441 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 356-971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 56-971 bp Feature: domain Description: GIIM Note: maturase Location: 1046-1256 bp Feature: domain Description: GIIM Note: maturase Location: 1046-1256 bp Feature: gene Location: 1577-2695 bp Feature: domain Description: Acyl_transf_3 Location: 1586-2630 bp Feature: domain Description: Acyl_transf_3 Location: 1586-263 0 bp Feature: gene Location: 2788-3651 bp Feature: domain Description: LytTR Location: 3361-3631 bp Feature: domain Description: LytTR Location: 3 3 61-3 63 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Acyl_transf_3 (pfam01757), RVT-GII, GIIM (pfam08388)

Seq: PJBS01000245.1 Psychroflexus sp. MES1-P1E contig215, whole genome shotgun sequence (2321 bp)
Overview 1 RT 1: 1129-2317 bp Neighborhood of RT #1 [1129, 2319] Tra8 Tra8 RVT-GII Feature: gene Location: 1129-1296 bp Feature: domain Description: Tra8 Location: 1135-1279 bp Feature: domain Description: Tra8 Location: 1135-1279 bp Feature: gene Location: 1434-1859 bp Feature: domain Description: Tra8 Location: 1449-1839 bp Feature: domain Description: Tra8 Location: 14 4 9-1839 bp Feature: gene Location: 1900-2319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1915-2317 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1915-2317 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra8 (COG2826), RVT-GII

Seq: PJBS01000085.1 Psychroflexus sp. MES1-P1E contig47, whole genome shotgun sequence (24360 bp)
Overview 1 RT 1: 9031-13140 bp Neighborhood of RT #1 [9031, 13140] acetolactate_decarboxylase RVT-GII GIIM RacX Feature: gene Location: 9031-9753 bp Feature: domain Description: acetolactate_decarboxylase Location: 9157-9742 bp Feature: domain Description: acetolactate_decarboxylase Location: 915 7-9742 bp Feature: gene Location: 9920-10150 bp Feature: gene Location: 10859-12112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11072-11729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11072-11729 bp Feature: domain Description: GIIM Note: maturase Location: 11840-12032 bp Feature: domain Description: GIIM Note: maturase Location: 11840-12032 bp Feature: gene Location: 12219-12902 bp Feature: domain Description: RacX Location: 12222-12897 bp Feature: domain Description: RacX Location: 12222-12897 bp Feature: gene Location: 12991-13140 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RacX (COG1794), acetolactate_decarboxylase (cd17299)

Seq: PJBS01000097.1 Psychroflexus sp. MES1-P1E contig86, whole genome shotgun sequence (11580 bp)
Overview 1 RT 1: 794-5248 bp Neighborhood of RT #1 [794, 5256] DUF3987 DUF3987 recomb_XerD RVT-DGRs Avd_like DUF1566 Feature: gene Location: 794-2053 bp Feature: domain Description: DUF3987 Location: 941-1157 bp Feature: domain Description: DUF3987 Location: 941-1157 bp Feature: domain Description: DUF3987 Location: 1172-1916 bp Feature: domain Description: DUF3987 Location: 1172-1916 bp Feature: gene Location: 2212-2370 bp Feature: domain Description: recomb_XerD Location: 2215-2350 bp Feature: domain Description: recomb_XerD Location: 2215-2350 bp Feature: gene Location: 2492-3676 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2693-3386 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 26 93-3386 bp Feature: gene Location: 3973-4359 bp Feature: domain Description: Avd_like Location: 4027-4333 bp Feature: domain Description: Avd_like Location: 4027-4333 bp Feature: gene Location: 4387-5256 bp Feature: domain Description: DUF1566 Location: 5008-5248 bp Feature: domain Description: DUF156 6 Location: 5008-5248 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT recomb_XerD (TIGR02225), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603), DUF3987 (pfam13148)