myRT

myRT report for GCA_002836315.1_ASM283631v1

Download annotations/find similar RTs

Seq: PJCD01000004.1 Shewanella sp. ALD9 contig11, whole genome shotgun sequence (107122 bp)
Overview 1 RT 1: 13466-18862 bp Neighborhood of RT #1 [13466, 18862] ComA-like_MBL-fold RVT_N RVT-GII GIIM Feature: gene Location: 13466-14683 bp Feature: domain Description: ComA-like_MBL-fold Location: 13844-14468 bp Feature: domain Description: ComA-like_MBL-fold Location: 1 3844-1 4468 bp Feature: gene Location: 14777-15052 bp Feature: gene Location: 15747-17378 bp Feature: domain Description: RVT_N Location: 15954-16197 bp Feature: domain Description: RVT_N Location: 1 5954-1 61 97 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16242-16869 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6242-1 6869 bp Feature: domain Description: GIIM Note: maturase Location: 16929-17154 bp Feature: domain Description: GIIM Note: maturase Location: 1 6929-1 71 54 bp Feature: gene Location: 17674-18195 bp Feature: gene Location: 18278-18862 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ComA-like_MBL-fold (cd07731), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: PJCD01000042.1 Shewanella sp. ALD9 contig5, whole genome shotgun sequence (332898 bp)
Overview 1 RT 1: 258086-263728 bp Neighborhood of RT #1 [258086, 263728] PRK00029 RVT-UG17 Feature: gene Location: 258086-259852 bp Feature: domain Description: PRK00029 Location: 258236-259772 bp Feature: domain Description: PRK0002 9 Location: 2 582 36-2 59772 bp Feature: gene Location: 260099-260365 bp Feature: gene Location: 260558-262246 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 260966-261371 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2 60966-2 61371 bp Feature: gene Location: 262243-263139 bp Feature: gene Location: 263579-263728 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00029 (YdiU family protein), RVT-UG17

Seq: PJCD01000044.1 Shewanella sp. ALD9 contig7, whole genome shotgun sequence (221902 bp)
Overview 1 RT 1: 140395-144172 bp Neighborhood of RT #1 [140395, 144172] InsE PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 140395-140694 bp Feature: domain Description: InsE Location: 140404-140692 bp Feature: domain Description: InsE Location: 140404-140692 bp Feature: gene Location: 140631-141113 bp Feature: domain Description: PHA02517 Location: 140760-141090 bp Feature: domain Description: PHA02517 Location: 140760-141090 bp Feature: gene Location: 141754-143277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142027-142759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142027-142759 bp Feature: domain Description: GIIM Note: maturase Location: 142831-143032 bp Feature: domain Description: GIIM Note: maturase Location: 14283 1-143 03 2 bp Feature: gene Location: 143406-143741 bp Feature: domain Description: PHA02517 Location: 143409-143736 bp Feature: domain Description: PHA02517 Location: 143 409-143 73 6 bp Feature: gene Location: 143945-144172 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)