myRT

myRT report for GCA_002836745.1_ASM283674v1

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Seq: PJAR01000039.1 Glaciecola sp. 33A contig11, whole genome shotgun sequence (150704 bp)
Overview 1 RT 1: 47-2530 bp Neighborhood of RT #1 [47, 2530] PEP-CTERM RVT-UG4 Feature: gene Location: 47-286 bp Feature: gene Location: 758-1309 bp Feature: domain Description: PEP-CTERM Location: 1235-1304 bp Feature: domain Description: PEP-CTERM Location: 1 235-1 304 bp Feature: gene Location: 1383-2030 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1485-1929 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 485-1 929 bp Feature: gene Location: 2064-2231 bp Feature: gene Location: 2345-2530 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PEP-CTERM, RVT-UG4

Seq: PJAR01000003.1 Glaciecola sp. 33A contig24, whole genome shotgun sequence (4987 bp)
Overview 1 RT 1: 1431-4938 bp Neighborhood of RT #1 [1431, 4985] CsgD PEP-CTERM RVT-UG4 DDE_Tnp_1_6 Feature: gene Location: 1431-2540 bp Feature: domain Description: CsgD Location: 2349-2532 bp Feature: domain Description: CsgD Location: 2 349-2 532 bp Feature: gene Location: 3162-3866 bp Feature: domain Description: PEP-CTERM Location: 3786-3849 bp Feature: domain Description: PEP-CTERM Location: 3786-3849 bp Feature: gene Location: 3883-4377 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 4009-4264 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 4009-42 64 bp Feature: gene Location: 4650-4985 bp Feature: domain Description: DDE_Tnp_1_6 Location: 4803-4938 bp Feature: domain Description: DDE_Tnp_1_6 Location: 4803-4938 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CsgD (COG2771), PEP-CTERM, RVT-UG4, DDE_Tnp_1_6 (pfam13751)

Seq: PJAR01000040.1 Glaciecola sp. 33A contig5, whole genome shotgun sequence (288503 bp)
Overview 1 RT 1: 113545-119046 bp Neighborhood of RT #1 [113545, 119046] Phage_GPA RVT-Retrons Feature: gene Location: 113545-113844 bp Feature: gene Location: 113841-115532 bp Feature: domain Description: Phage_GPA Location: 114252-115107 bp Feature: domain Description: Phage_GPA Location: 114252-115107 bp Feature: gene Location: 115909-116844 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 116011-116605 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 116011-116605 bp Feature: gene Location: 116841-117809 bp Feature: gene Location: 118864-119046 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GPA (pfam05840), RVT-Retrons