myRT

myRT report for GCA_002839355.1_ASM283935v1

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Seq: PGXW01000041.1 Spirochaetae bacterium HGW-Spirochaetae-2 08E140C01_scaffold_1527, whole genome shotgun sequence (23162 bp)
Overview 1 RT 1: 16733-22370 bp Neighborhood of RT #1 [16733, 23035] T5orf172 ResIII HsdR Eco57I RVT-UG14 Feature: gene Location: 16733-20971 bp Feature: domain Description: T5orf172 Location: 16814-17036 bp Feature: domain Description: T5orf1 72 Location: 1 681 4-1 7036 bp Feature: domain Description: ResIII Location: 17117-17654 bp Feature: domain Description: ResIII Location: 1 71 1 7-1 7654 bp Feature: domain Description: HsdR Location: 18164-18389 bp Feature: domain Description: HsdR Location: 1 81 64-1 8389 bp Feature: domain Description: Eco57I Location: 19949-20240 bp Feature: domain Description: Eco57I Location: 1 9949-20240 bp Feature: gene Location: 21284-21424 bp Feature: gene Location: 21479-23035 bp Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 21896-22370 bp Feature: RT Description: RVT-UG1 4 Note: UG1 4 RT Location: 21 896-22370 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT T5orf172 (smart00974), ResIII (pfam04851), HsdR (COG4096), Eco57I (pfam07669), RVT-UG14

Seq: PGXW01000046.1 Spirochaetae bacterium HGW-Spirochaetae-2 08E140C01_scaffold_1795, whole genome shotgun sequence (30294 bp)
Overview 1 RT 1: 674-8427 bp Neighborhood of RT #1 [674, 8618] RVT-GII INT_RitA_C_like INT_RitB_C_like Phage_int_SAM_1 INT_RitC_C_like RVT-GII GIIM COG1373 AbiEii Feature: gene Location: 674-883 bp Feature: gene Location: 868-1101 bp Feature: gene Location: 1372-2136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1753-2131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1753-2 131 bp Feature: gene Location: 2295-3542 bp Feature: domain Description: INT_RitA_C_like Location: 2961-3495 bp Feature: domain Description: INT_RitA_C_like Location: 2 961-3495 bp Feature: gene Location: 3523-4503 bp Feature: domain Description: INT_RitB_C_like Location: 3856-4441 bp Feature: domain Description: INT_RitB_C_like Location: 3856-4441 bp Feature: gene Location: 4481-5488 bp Feature: domain Description: Phage_int_SAM_1 Location: 4538-4769 bp Feature: domain Description: Phage_int_SAM_1 Location: 4538-4769 bp Feature: domain Description: INT_RitC_C_like Location: 4862-5405 bp Feature: domain Description: INT_RitC_C_like Location: 4862 -5405 bp Feature: gene Location: 5647-6318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5650-5812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5650-5812 bp Feature: domain Description: GIIM Note: maturase Location: 5872-6094 bp Feature: domain Description: GIIM Note: maturase Location: 5872 -6094 bp Feature: gene Location: 6422-7630 bp Feature: domain Description: COG1373 Location: 6431-7628 bp Feature: domain Description: COG1373 Location: 6431-762 8 bp Feature: gene Location: 7815-8618 bp Feature: domain Description: AbiEii Location: 7917-8427 bp Feature: domain Description: AbiEii Location: 7917-842 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, INT_RitA_C_like (cd01188), INT_RitB_C_like (cd00797), Phage_int_SAM_1 (pfam02899), INT_RitC_C_like (cd01182), GIIM (pfam08388), COG1373 (Predicted ATPase, AAA+ superfamily ), AbiEii (pfam08843)

Seq: PGXW01000077.1 Spirochaetae bacterium HGW-Spirochaetae-2 08E140C01_scaffold_34872, whole genome shotgun sequence (1464 bp)
Overview 1 RT 1: 3-1462 bp Neighborhood of RT #1 [3, 1461] RVT-GII GIIM Feature: gene Location: 3-353 bp Feature: gene Location: 340-1461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 616-1231 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 616-123 1 bp Feature: domain Description: GIIM Note: maturase Location: 1279-1462 bp Feature: domain Description: GIIM Note: maturase Location: 1279-1462 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PGXW01000012.1 Spirochaetae bacterium HGW-Spirochaetae-2 08E140C01_scaffold_419, whole genome shotgun sequence (88032 bp)
Overview 1 RT 1: 79714-85761 bp Neighborhood of RT #1 [79714, 85802] YdhJ Phage_int_SAM_3 INT_ICEBs1_C_like RVT-UG15 HTH_17 Feature: gene Location: 79714-81300 bp Feature: domain Description: YdhJ Location: 79798-81160 bp Feature: domain Description: YdhJ Location: 79798-81160 bp Feature: gene Location: 81607-82800 bp Feature: domain Description: Phage_int_SAM_3 Location: 81865-81979 bp Feature: domain Description: Phage_int_SAM_3 Location: 81865-81979 bp Feature: domain Description: INT_ICEBs1_C_like Location: 82222-82735 bp Feature: domain Description: INT_ICEBs1_C_like Location: 82222-82735 bp Feature: gene Location: 82886-84451 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 83291-83765 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 83291-83765 bp Feature: gene Location: 84500-85621 bp Feature: gene Location: 85602-85802 bp Feature: domain Description: HTH_17 Location: 85614-85761 bp Feature: domain Description: HTH_17 Location: 85614 -85761 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YdhJ (COG1078), Phage_int_SAM_3 (pfam14659), INT_ICEBs1_C_like (cd01189), RVT-UG15, HTH_17 (pfam12728)

Seq: PGXW01000083.1 Spirochaetae bacterium HGW-Spirochaetae-2 08E140C01_scaffold_50090, whole genome shotgun sequence (1058 bp)
Overview 1 RT 1: 1-1058 bp Neighborhood of RT #1 [1, 1057] RVT-GII Feature: gene Location: 1-174 bp Feature: gene Location: 530-1057 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 830-1058 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 830-105 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII