myRT

myRT report for GCA_002841435.1_ASM284143v1

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Seq: PGZS01000242.1 Firmicutes bacterium HGW-Firmicutes-3 bjp_ig2102_scaffold_17124, whole genome shotgun sequence (2273 bp)
Overview 1 RT 1: 661-1774 bp Neighborhood of RT #1 [661, 2178] RVT_N RVT-GII GIIM Feature: gene Location: 661-2178 bp Feature: RT Description: RVT_N Location: 664-790 bp Feature: RT Description: RVT_N Location: 664-790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 841-1489 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 841 -1 489 bp Feature: domain Description: GIIM Note: maturase Location: 1543-1774 bp Feature: domain Description: GIIM Note: maturase Location: 1 543-1 774 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: PGZS01000061.1 Firmicutes bacterium HGW-Firmicutes-3 bjp_ig2102_scaffold_2432, whole genome shotgun sequence (13473 bp)
Overview 1 RT 1: 10106-13464 bp Neighborhood of RT #1 [10106, 13472] RVT-Retrons GGGtGRT Feature: gene Location: 10106-10339 bp Feature: gene Location: 10366-10539 bp Feature: gene Location: 10583-11605 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10811-11366 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10811-11366 bp Feature: gene Location: 11631-12188 bp Feature: gene Location: 12438-13472 bp Feature: domain Description: GGGtGRT Location: 12486-13464 bp Feature: domain Description: GGGtGRT Location: 12 486-13464 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, GGGtGRT (pfam14057)

Seq: PGZS01000127.1 Firmicutes bacterium HGW-Firmicutes-3 bjp_ig2102_scaffold_4878, whole genome shotgun sequence (6825 bp)
Overview 1 RT 1: 277-5869 bp Neighborhood of RT #1 [277, 5869] TIR_2 RVT_N RVT-GII GIIM Feature: gene Location: 277-1470 bp Feature: gene Location: 1666-2784 bp Feature: domain Description: TIR_2 Location: 1684-2011 bp Feature: domain Description: TIR_2 Location: 1684-2011 bp Feature: gene Location: 2923-4338 bp Feature: RT Description: RVT_N Location: 2983-3214 bp Feature: RT Description: RVT_N Location: 2983 -3 214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3238-3892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 23 8-3 892 bp Feature: domain Description: GIIM Note: maturase Location: 3943-4177 bp Feature: domain Description: GIIM Note: maturase Location: 3 943 -4177 bp Feature: gene Location: 4487-4615 bp Feature: gene Location: 4928-5869 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIR_2 (pfam13676), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: PGZS01000343.1 Firmicutes bacterium HGW-Firmicutes-3 bjp_ig2102_scaffold_51841, whole genome shotgun sequence (1548 bp)
Overview 1 RT 1: 338-1465 bp Neighborhood of RT #1 [338, 1545] RVT-GII RVT-GII GIIM Feature: gene Location: 338-829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 542-809 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54 2-809 bp Feature: gene Location: 832-1545 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 835-1162 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 835-1162 bp Feature: domain Description: GIIM Note: maturase Location: 1243-1465 bp Feature: domain Description: GIIM Note: maturase Location: 124 3-14 65 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PGZS01000002.1 Firmicutes bacterium HGW-Firmicutes-3 bjp_ig2102_scaffold_542, whole genome shotgun sequence (50041 bp)
Overview 1 RT 1: 3923-10119 bp Neighborhood of RT #1 [3923, 10499] HTH_3 RVT-GII PHA02517 InsE RVT-GII DPM1_like_bac Feature: gene Location: 3923-4147 bp Feature: domain Description: HTH_3 Location: 3962-4112 bp Feature: domain Description: HTH_3 Location: 3962-4112 bp Feature: gene Location: 4457-4660 bp Feature: gene Location: 4698-5681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4932-5550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4932-5 5 5 0 bp Feature: gene Location: 5709-6557 bp Feature: domain Description: PHA02517 Location: 5760-6546 bp Feature: domain Description: PHA025 17 Location: 5 760-65 46 bp Feature: gene Location: 6569-6826 bp Feature: domain Description: InsE Location: 6575-6809 bp Feature: domain Description: InsE Location: 65 75 -6809 bp Feature: gene Location: 7160-7621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7163-7427 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7163-7427 bp Feature: gene Location: 7911-8990 bp Feature: gene Location: 9549-10499 bp Feature: domain Description: DPM1_like_bac Location: 9576-10119 bp Feature: domain Description: DPM1_like_bac Location: 95 76-10119 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_3 (pfam01381), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), DPM1_like_bac (cd04187)

Seq: PGZS01000154.1 Firmicutes bacterium HGW-Firmicutes-3 bjp_ig2102_scaffold_5947, whole genome shotgun sequence (10364 bp)
Overview 1 RT 1: 1156-8974 bp Neighborhood of RT #1 [1156, 8994] RelE Peptidases_S8_Autotransporter_serine_protease_like RVT-GII RVT-GII GIIM PRK09776 HDGYP Fe-ADH-like Feature: gene Location: 1156-1422 bp Feature: domain Description: RelE Location: 1159-1420 bp Feature: domain Description: RelE Location: 1159-1420 bp Feature: gene Location: 1590-3695 bp Feature: domain Description: Peptidases_S8_Autotransporter_serine_protease_like Location: 2097-2934 bp Feature: domain Description: Peptidases_S8_Autotransporter_serine_protease_like Location: 2097-2934 bp Feature: gene Location: 4927-5637 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5227-5620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5227-56 20 bp Feature: gene Location: 5703-6215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5709-5793 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5709-5793 bp Feature: domain Description: GIIM Note: maturase Location: 5877-6081 bp Feature: domain Description: GIIM Note: maturase Location: 5877-6 081 bp Feature: gene Location: 6339-7829 bp Feature: domain Description: PRK09776 Location: 6753-7143 bp Feature: domain Description: PRK09776 Location: 6 753-7143 bp Feature: domain Description: HDGYP Location: 7158-7815 bp Feature: domain Description: HDGYP Location: 7158-7815 bp Feature: gene Location: 7807-8994 bp Feature: domain Description: Fe-ADH-like Location: 7855-8974 bp Feature: domain Description: Fe-ADH-like Location: 7855-8974 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RelE (pfam06296), Peptidases_S8_Autotransporter_serine_protease_like (cd04848), RVT-GII, GIIM (pfam08388), PRK09776 (putative diguanylate cyclase; Provisional), HDGYP (COG2206), Fe-ADH-like (cd17814)