myRT

myRT report for GCA_002841525.1_ASM284152v1

Download annotations/find similar RTs

Seq: PGZY01000003.1 Firmicutes bacterium HGW-Firmicutes-17 08E140C01_z5_2013_Ig3399_v2_scaffold_1412, whole genome shotgun sequence (25925 bp)
Overview 1 RT 1: 15164-20410 bp Neighborhood of RT #1 [15164, 20410] COG3587 sigma70-ECF RVT-GII GIIM Feature: gene Location: 15164-18247 bp Feature: domain Description: COG3587 Location: 15188-18215 bp Feature: domain Description: COG3587 Location: 1 51 88-1 821 5 bp Feature: gene Location: 18623-19048 bp Feature: domain Description: sigma70-ECF Location: 18749-19031 bp Feature: domain Description: sigma70-ECF Location: 1 8749-1 9031 bp Feature: gene Location: 19228-19872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19285-19426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 9285-1 9426 bp Feature: domain Description: GIIM Note: maturase Location: 19477-19693 bp Feature: domain Description: GIIM Note: maturase Location: 1 9477-1 9693 bp Feature: gene Location: 19965-20261 bp Feature: gene Location: 20282-20410 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3587 (Restriction endonuclease ), sigma70-ECF (TIGR02937), RVT-GII, GIIM (pfam08388)

Seq: PGZY01000031.1 Firmicutes bacterium HGW-Firmicutes-17 08E140C01_z5_2013_Ig3399_v2_scaffold_3285, whole genome shotgun sequence (12476 bp)
Overview 1 RT 1: 8354-12470 bp Neighborhood of RT #1 [8354, 12475] DUF2326 RVT-GII DDE_Tnp_1_4 Feature: gene Location: 8354-8581 bp Feature: gene Location: 8572-10290 bp Feature: domain Description: DUF2326 Location: 9907-10282 bp Feature: domain Description: DUF2 32 6 Location: 9907-102 82 bp Feature: gene Location: 10754-11590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11108-11582 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11108-11582 bp Feature: gene Location: 11771-12475 bp Feature: domain Description: DDE_Tnp_1_4 Location: 11783-12470 bp Feature: domain Description: DDE_Tnp_1_4 Location: 11783-12 470 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF2326 (pfam10088), RVT-GII, DDE_Tnp_1_4 (pfam13701)