myRT

myRT report for GCA_002844495.1_ASM284449v1

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Seq: NMUP01000135.1 Escherichia coli strain WW10 NODE_135_length_4275_cov_103.119, whole genome shotgun sequence (4275 bp)
Overview 1 RT 1: 1-3307 bp Neighborhood of RT #1 [1, 3309] DDE_Tnp_IS240 PRK10276 RVT-GII InsA DDE_Tnp_IS1 Feature: gene Location: 1-198 bp Feature: domain Description: DDE_Tnp_IS240 Location: 4-130 bp Feature: domain Description: DDE_Tnp_IS240 Location: 4-1 30 bp Feature: gene Location: 232-573 bp Feature: domain Description: PRK10276 Location: 235-556 bp Feature: domain Description: PRK1 0276 Location: 235-556 bp Feature: gene Location: 974-2461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1379-2069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 379-2069 bp Feature: gene Location: 2612-2887 bp Feature: domain Description: InsA Location: 2615-2882 bp Feature: domain Description: InsA Location: 261 5-2882 bp Feature: gene Location: 2932-3309 bp Feature: domain Description: DDE_Tnp_IS1 Location: 2935-3307 bp Feature: domain Description: DDE_Tnp_IS1 Location: 2935-3307 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS240 (pfam13610), InsA (COG3677), DDE_Tnp_IS1 (pfam03400), RVT-GII

Seq: NMUP01000168.1 Escherichia coli strain WW10 NODE_168_length_2272_cov_111.74, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 2-1936 bp Neighborhood of RT #1 [2, 2181] RVT-GII GIIM Feature: gene Location: 2-364 bp Feature: gene Location: 658-2181 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-1663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-1663 bp Feature: domain Description: GIIM Note: maturase Location: 1738-1936 bp Feature: domain Description: GIIM Note: maturase Location: 1738-1936 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: NMUP01000097.1 Escherichia coli strain WW10 NODE_97_length_14138_cov_13.9499, whole genome shotgun sequence (14138 bp)
Overview 1 RT 1: 884-3227 bp Neighborhood of RT #1 [884, 4144] HTH_XRE RVT-Retrons PRK13889 Feature: gene Location: 884-1099 bp Feature: gene Location: 1190-1471 bp Feature: domain Description: HTH_XRE Location: 1205-1370 bp Feature: domain Description: HTH_XRE Location: 1205-13 70 bp Feature: gene Location: 1464-2267 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1605-2157 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1605-2157 bp Feature: gene Location: 2281-2565 bp Feature: gene Location: 2642-4144 bp Feature: domain Description: PRK13889 Location: 2645-3227 bp Feature: domain Description: PRK13 889 Location: 2645-3 227 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, PRK13889 (conjugal transfer relaxase TraA; Provisional)