myRT

myRT report for GCA_002844975.1_ASM284497v1

Download annotations/find similar RTs

Seq: PJPF01000101.1 Klebsiella pneumoniae strain SH-16 NODE101length1892cov459358, whole genome shotgun sequence (1892 bp)
Overview 1 RT 1: 347-1442 bp Neighborhood of RT #1 [347, 1834] RVT-GII Feature: gene Location: 347-1834 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 752-1442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 752-1 442 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PJPF01000030.1 Klebsiella pneumoniae strain SH-16 NODE30length81052cov311026, whole genome shotgun sequence (81052 bp)
Overview 1 RT 1: 76560-80846 bp Neighborhood of RT #1 [76560, 81049] AAA_15 RVT-Retrons Feature: gene Location: 76560-76865 bp Feature: gene Location: 77744-80020 bp Feature: domain Description: AAA_15 Location: 77777-78785 bp Feature: domain Description: AAA_15 Location: 77777-78785 bp Feature: gene Location: 80135-81049 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 80318-80846 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 80318-80846 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), RVT-Retrons

Seq: PJPF01000060.1 Klebsiella pneumoniae strain SH-16 NODE60length13822cov406236, whole genome shotgun sequence (13822 bp)
Overview 1 RT 1: 2833-6436 bp Neighborhood of RT #1 [2833, 6561] RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 2833-3090 bp Feature: gene Location: 3121-3396 bp Feature: gene Location: 3970-5637 bp Feature: RT Description: RVT_N Location: 4018-4255 bp Feature: RT Description: RVT_N Location: 4018-4255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4306-4948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 06-4948 bp Feature: domain Description: GIIM Note: maturase Location: 4999-5233 bp Feature: domain Description: GIIM Note: maturase Location: 4999-523 3 bp Feature: domain Description: HNHc Note: nucleases Location: 5443-5602 bp Feature: domain Description: HNHc Note: nucleases Location: 5443 -5602 bp Feature: gene Location: 5951-6142 bp Feature: gene Location: 6139-6561 bp Feature: domain Description: DUF1380 Location: 6142-6436 bp Feature: domain Description: DUF13 80 Location: 6142-643 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)