myRT

myRT report for GCA_002846365.1_ASM284636v1

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Seq: PJMW01000001.1 Nocardia fluminea strain DSM 44489 Ga0074766_11, whole genome shotgun sequence (1520710 bp)
Overview 1 RT 1: 977798-980681 bp 2 RT 2: 1051999-1056813 bp Neighborhood of RT #1 [977798, 980681] RVT-CRISPR-like Neighborhood of RT #2 [1051999, 1056813] HTH_ARSR RVT-GII GIIM Feature: gene Location: 977798-978286 bp Feature: gene Location: 978872-979072 bp Feature: gene Location: 979174-979689 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 979381-979669 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 979381 -979669 bp Feature: gene Location: 980103-980288 bp Feature: gene Location: 980550-980681 bp Feature: gene Location: 1051999-1052214 bp Feature: domain Description: HTH_ARSR Location: 1052023-1052173 bp Feature: domain Description: HTH_ARSR Location: 1 052023-1 0521 73 bp Feature: gene Location: 1052440-1053081 bp Feature: gene Location: 1053723-1055156 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1053981-1054689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 053981 -1 054689 bp Feature: domain Description: GIIM Note: maturase Location: 1054767-1054998 bp Feature: domain Description: GIIM Note: maturase Location: 1 054767-1 054998 bp Feature: gene Location: 1055579-1056004 bp Feature: gene Location: 1056211-1056813 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, HTH_ARSR (smart00418), RVT-GII, GIIM (pfam08388)

Seq: PJMW01000002.1 Nocardia fluminea strain DSM 44489 Ga0074766_12, whole genome shotgun sequence (5980900 bp)
Overview 1 RT 1: 3724556-3729242 bp Neighborhood of RT #1 [3724556, 3729242] RVT-GII GIIM Feature: gene Location: 3724556-3725158 bp Feature: gene Location: 3725347-3725967 bp Feature: gene Location: 3726174-3727607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3726432-3727140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 372 6432 -372 7140 bp Feature: domain Description: GIIM Note: maturase Location: 3727218-3727449 bp Feature: domain Description: GIIM Note: maturase Location: 372 72 18-372 7449 bp Feature: gene Location: 3728473-3728949 bp Feature: gene Location: 3728946-3729242 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PJMW01000003.1 Nocardia fluminea strain DSM 44489 Ga0074766_13, whole genome shotgun sequence (313183 bp)
Overview 1 RT 1: 38587-42999 bp Neighborhood of RT #1 [38587, 42999] RVT-GII GIIM Feature: gene Location: 38587-39060 bp Feature: gene Location: 39075-39284 bp Feature: gene Location: 39926-41359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40184-40892 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40184-40892 bp Feature: domain Description: GIIM Note: maturase Location: 40970-41201 bp Feature: domain Description: GIIM Note: maturase Location: 40970-41201 bp Feature: gene Location: 41560-42186 bp Feature: gene Location: 42391-42999 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PJMW01000004.1 Nocardia fluminea strain DSM 44489 Ga0074766_14, whole genome shotgun sequence (242908 bp)
Overview 1 RT 1: 197921-206845 bp Neighborhood of RT #1 [197921, 206973] PKS_PP PksD PP-binding KBL_like RVT-Retrons LCB5 LCB5 amphi-Trp Feature: gene Location: 197921-198187 bp Feature: domain Description: PKS_PP Location: 197951-198170 bp Feature: domain Description: PKS_PP Location: 197951-198170 bp Feature: gene Location: 198184-202650 bp Feature: domain Description: PksD Location: 198193-200995 bp Feature: domain Description: PksD Location: 198193-200995 bp Feature: domain Description: PP-binding Location: 201124-201319 bp Feature: domain Description: PP-binding Location: 201124 -201319 bp Feature: domain Description: KBL_like Location: 201565-202603 bp Feature: domain Description: KBL_like Location: 201565-202603 bp Feature: gene Location: 202654-205239 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 204403-205006 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 204 4 03-205006 bp Feature: gene Location: 205291-206616 bp Feature: domain Description: LCB5 Location: 205687-206110 bp Feature: domain Description: LCB5 Location: 205687-206110 bp Feature: domain Description: LCB5 Location: 206383-206539 bp Feature: domain Description: LCB5 Location: 206383-206539 bp Feature: gene Location: 206626-206973 bp Feature: domain Description: amphi-Trp Location: 206647-206845 bp Feature: domain Description: amphi-Trp Location: 20664 7-20684 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PKS_PP (smart00823), PksD (COG3321), PP-binding (pfam00550), KBL_like (cd06454), RVT-Retrons, LCB5 (COG1597), amphi-Trp (TIGR04354)