myRT

myRT report for GCA_002846475.1_ASM284647v1

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Seq: PJNB01000001.1 Saccharopolyspora spinosa strain DSM 44228 Ga0074763_11, whole genome shotgun sequence (9020646 bp)
Overview 1 RT 1: 953535-961583 bp 2 RT 2: 2319822-2328293 bp 3 RT 3: 3794722-3796943 bp 4 RT 4: 4729662-4738682 bp 5 RT 5: 4833351-4838635 bp 6 RT 6: 4898025-4905458 bp 7 RT 7: 5472123-5478364 bp 8 RT 8: 5814208-5829476 bp 9 RT 9: 5868857-5876910 bp 10 RT 10: 6341814-6346470 bp 11 RT 11: 7546490-7553817 bp 12 RT 12: 8134997-8141871 bp 13 RT 13: 8215965-8221569 bp Neighborhood of RT #1 [953535, 961618] PEP_mutase HTH_32 HTH_32 DDE_3 RVT_N RVT-GII GIIM AXO Neighborhood of RT #2 [2319822, 2328304] LysR DDE_Tnp_4 RVT-GII GIIM Penicil_amidase M20_Acy1-like Neighborhood of RT #3 [3794722, 3796943] RVT-GII RsdA_SigD_bd Neighborhood of RT #4 [4729662, 4738711] GlcD GlpC IS5 RVT_N RVT-GII GIIM HTH_32 HTH_32 DDE_3 DDE_Tnp_4 Neighborhood of RT #5 [4833351, 4838635] PRK02186 eno RVT-GII Sialidase_non-viral Neighborhood of RT #6 [4898025, 4905484] RVT-GII RVT-GII GIIM HTH_32 HTH_32 DDE_3 COG5659 COG5659 Neighborhood of RT #7 [5472123, 5478984] DDE_Tnp_1_2 DUF4096 RVT-GII GIIM DDE_5 RVT-GII GIIM IstB_IS21 HTH_38 COG4584 Neighborhood of RT #8 [5814208, 5829476] RVT-GII GIIM Peptidase_C14 KOG1803 KOG1803 RVT-GII GIIM zf-ISL3 Neighborhood of RT #9 [5868857, 5876910] HTH_32 rve_3 DDE_5 RVT-GII GIIM HTH_32 HTH_32 DDE_3 Neighborhood of RT #10 [6341814, 6346470] COG5659 HTH_32 HTH_32 DDE_3 RVT-GII GIIM DDE_5 Neighborhood of RT #11 [7546490, 7553817] YHI9 PHZA_PHZB RVT-GII GIIM RVT-GII Intron_maturas2 DDE_Tnp_4 Neighborhood of RT #12 [8134997, 8141871] ALDH_KGSADH HTH_32 HTH_32 DDE_3 RVT_N RVT-GII GIIM Neighborhood of RT #13 [8215965, 8221649] DDE_5 RVT-GII GIIM Peptidase_C39_2 Feature: gene Location: 953535-954965 bp Feature: domain Description: PEP_mutase Location: 954174-954888 bp Feature: domain Description: PEP_mutase Location: 9541 74-954888 bp Feature: gene Location: 955132-956310 bp Feature: domain Description: HTH_32 Location: 955306-955459 bp Feature: domain Description: HTH_32 Location: 955306-955459 bp Feature: domain Description: HTH_32 Location: 955552-955765 bp Feature: domain Description: HTH_32 Location: 955552-955765 bp Feature: domain Description: DDE_3 Location: 955888-956254 bp Feature: domain Description: DDE_3 Location: 955888-956254 bp Feature: gene Location: 956932-958710 bp Feature: RT Description: RVT_N Location: 957010-957247 bp Feature: RT Description: RVT_N Location: 95701 0-957247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 957307-957964 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 957307-957964 bp Feature: domain Description: GIIM Note: maturase Location: 958024-958255 bp Feature: domain Description: GIIM Note: maturase Location: 958024-958255 bp Feature: gene Location: 959036-959602 bp Feature: gene Location: 959684-961618 bp Feature: domain Description: AXO Location: 959702-961583 bp Feature: domain Description: AXO Location: 959702-961 583 bp Feature: gene Location: 2319822-2320871 bp Feature: domain Description: LysR Location: 2319888-2320341 bp Feature: domain Description: LysR Location: 231 9888-2320341 bp Feature: gene Location: 2320933-2321769 bp Feature: domain Description: DDE_Tnp_4 Location: 2321317-2321743 bp Feature: domain Description: DDE_Tnp_4 Location: 2321 31 7-2321 743 bp Feature: gene Location: 2322519-2323769 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2322735-2323386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2322735-2323386 bp Feature: domain Description: GIIM Note: maturase Location: 2323479-2323704 bp Feature: domain Description: GIIM Note: maturase Location: 2323479-2323704 bp Feature: gene Location: 2324076-2326913 bp Feature: domain Description: Penicil_amidase Location: 2324436-2326872 bp Feature: domain Description: Penicil_amidase Location: 2324436-2326872 bp Feature: gene Location: 2327048-2328304 bp Feature: domain Description: M20_Acy1-like Location: 2327099-2328293 bp Feature: domain Description: M20_Acy1 -like Location: 2327099-2328293 bp Feature: gene Location: 3794722-3794874 bp Feature: gene Location: 3794965-3795363 bp Feature: gene Location: 3795304-3795819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3795418-3795814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 379541 8-379581 4 bp Feature: gene Location: 3795874-3796710 bp Feature: domain Description: RsdA_SigD_bd Location: 3796096-3796237 bp Feature: domain Description: RsdA_SigD_bd Location: 3796096-3796237 bp Feature: gene Location: 3796710-3796943 bp Feature: gene Location: 4729662-4732526 bp Feature: domain Description: GlcD Location: 4729725-4731174 bp Feature: domain Description: GlcD Location: 4729725-4731 1 74 bp Feature: domain Description: GlpC Location: 4731279-4732470 bp Feature: domain Description: GlpC Location: 4731 279-4732470 bp Feature: gene Location: 4732667-4733062 bp Feature: domain Description: IS5 Location: 4732886-4733051 bp Feature: domain Description: IS5 Location: 4732886-4733051 bp Feature: gene Location: 4733475-4735253 bp Feature: RT Description: RVT_N Location: 4733553-4733790 bp Feature: RT Description: RVT_N Location: 4733553-4733790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4733850-4734507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4733850-4734507 bp Feature: domain Description: GIIM Note: maturase Location: 4734567-4734798 bp Feature: domain Description: GIIM Note: maturase Location: 4734567-4734798 bp Feature: gene Location: 4735875-4736972 bp Feature: domain Description: HTH_32 Location: 4735968-4736121 bp Feature: domain Description: HTH_32 Location: 4735968-47361 21 bp Feature: domain Description: HTH_32 Location: 4736214-4736427 bp Feature: domain Description: HTH_32 Location: 473621 4-4736427 bp Feature: domain Description: DDE_3 Location: 4736550-4736916 bp Feature: domain Description: DDE_3 Location: 4736550-473691 6 bp Feature: gene Location: 4737887-4738711 bp Feature: domain Description: DDE_Tnp_4 Location: 4738208-4738682 bp Feature: domain Description: DDE_Tnp_4 Location: 4738208-4738682 bp Feature: gene Location: 4833351-4834601 bp Feature: domain Description: PRK02186 Location: 4833558-4834587 bp Feature: domain Description: PRK021 86 Location: 4833558-4834587 bp Feature: gene Location: 4834730-4836013 bp Feature: domain Description: eno Location: 4834733-4835996 bp Feature: domain Description: eno Location: 4834733-4835996 bp Feature: gene Location: 4836936-4837373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4837065-4837251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4837065-4837251 bp Feature: gene Location: 4837505-4838344 bp Feature: domain Description: Sialidase_non-viral Location: 4837541-4838078 bp Feature: domain Description: Sialidase_non-viral Location: 4837541 -4838078 bp Feature: gene Location: 4838474-4838635 bp Feature: gene Location: 4898025-4899002 bp Feature: gene Location: 4899019-4899474 bp Feature: gene Location: 4900390-4901880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4900798-4901488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4900798-4901 488 bp Feature: gene Location: 4901964-4903310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4902264-4902924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4902264-4902924 bp Feature: domain Description: GIIM Note: maturase Location: 4903005-4903236 bp Feature: domain Description: GIIM Note: maturase Location: 4903005-4903236 bp Feature: gene Location: 4903396-4904637 bp Feature: domain Description: HTH_32 Location: 4903489-4903642 bp Feature: domain Description: HTH_32 Location: 4903489-4903642 bp Feature: domain Description: HTH_32 Location: 4903735-4903948 bp Feature: domain Description: HTH_32 Location: 4903735-4903948 bp Feature: domain Description: DDE_3 Location: 4904071-4904503 bp Feature: domain Description: DDE_3 Location: 4904071 -4904503 bp Feature: gene Location: 4904858-4905484 bp Feature: domain Description: COG5659 Location: 4904924-4905077 bp Feature: domain Description: COG5659 Location: 4904924-4905077 bp Feature: domain Description: COG5659 Location: 4905128-4905458 bp Feature: domain Description: COG5659 Location: 49051 28-4905458 bp Feature: gene Location: 5472123-5472824 bp Feature: domain Description: DDE_Tnp_1_2 Location: 5472537-5472822 bp Feature: domain Description: DDE_Tnp_1 _2 Location: 5472537-5472822 bp Feature: gene Location: 5472572-5472958 bp Feature: domain Description: DUF4096 Location: 5472575-5472767 bp Feature: domain Description: DUF4096 Location: 5472575-5472767 bp Feature: gene Location: 5473067-5474056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5473070-5473670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5473070-5473670 bp Feature: domain Description: GIIM Note: maturase Location: 5473751-5473982 bp Feature: domain Description: GIIM Note: maturase Location: 5473751 -5473982 bp Feature: gene Location: 5474212-5475432 bp Feature: domain Description: DDE_5 Location: 5474233-5475046 bp Feature: domain Description: DDE_5 Location: 5474233-5475046 bp Feature: gene Location: 5475612-5476571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5475657-5476185 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5475657-54761 85 bp Feature: domain Description: GIIM Note: maturase Location: 5476266-5476497 bp Feature: domain Description: GIIM Note: maturase Location: 5476266-5476497 bp Feature: gene Location: 5476634-5477437 bp Feature: domain Description: IstB_IS21 Location: 5476844-5477351 bp Feature: domain Description: IstB_IS21 Location: 5476844-5477351 bp Feature: gene Location: 5477434-5478984 bp Feature: domain Description: HTH_38 Location: 5477440-5477566 bp Feature: domain Description: HTH_38 Location: 5477440-5477566 bp Feature: domain Description: COG4584 Location: 5477767-5478364 bp Feature: domain Description: COG4584 Location: 5477767-5478364 bp Feature: gene Location: 5814208-5815557 bp Feature: gene Location: 5816736-5818253 bp Feature: gene Location: 5818391-5819716 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5818586-5819282 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 581 8586-581 9282 bp Feature: domain Description: GIIM Note: maturase Location: 5819351-5819576 bp Feature: domain Description: GIIM Note: maturase Location: 581 9351 -581 9576 bp Feature: gene Location: 5819989-5820438 bp Feature: gene Location: 5820473-5824207 bp Feature: domain Description: Peptidase_C14 Location: 5820497-5821190 bp Feature: domain Description: Peptidase_C1 4 Location: 5820497-5821 1 90 bp Feature: domain Description: KOG1803 Location: 5822066-5822390 bp Feature: domain Description: KOG1 803 Location: 5822066-5822390 bp Feature: domain Description: KOG1803 Location: 5823023-5823791 bp Feature: domain Description: KOG1 803 Location: 5823023-5823791 bp Feature: gene Location: 5824204-5824599 bp Feature: gene Location: 5825125-5825634 bp Feature: gene Location: 5826007-5827479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5826349-5827045 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5826349-5827045 bp Feature: domain Description: GIIM Note: maturase Location: 5827114-5827339 bp Feature: domain Description: GIIM Note: maturase Location: 58271 1 4-5827339 bp Feature: gene Location: 5828170-5828793 bp Feature: domain Description: zf-ISL3 Location: 5828275-5828404 bp Feature: domain Description: zf-ISL3 Location: 5828275-5828404 bp Feature: gene Location: 5828949-5829476 bp Feature: gene Location: 5868857-5869942 bp Feature: domain Description: HTH_32 Location: 5869112-5869310 bp Feature: domain Description: HTH_32 Location: 58691 1 2-586931 0 bp Feature: domain Description: rve_3 Location: 5869646-5869838 bp Feature: domain Description: rve_3 Location: 5869646-5869838 bp Feature: gene Location: 5870270-5871556 bp Feature: domain Description: DDE_5 Location: 5870357-5871170 bp Feature: domain Description: DDE_5 Location: 5870357-5871 1 70 bp Feature: gene Location: 5871646-5873052 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5872006-5872666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5872006-5872666 bp Feature: domain Description: GIIM Note: maturase Location: 5872747-5872978 bp Feature: domain Description: GIIM Note: maturase Location: 5872747-5872978 bp Feature: gene Location: 5873521-5874762 bp Feature: domain Description: HTH_32 Location: 5873614-5873767 bp Feature: domain Description: HTH_32 Location: 587361 4-5873767 bp Feature: domain Description: HTH_32 Location: 5873860-5874073 bp Feature: domain Description: HTH_32 Location: 5873860-5874073 bp Feature: domain Description: DDE_3 Location: 5874196-5874628 bp Feature: domain Description: DDE_3 Location: 58741 96-5874628 bp Feature: gene Location: 5874889-5876910 bp Feature: gene Location: 6341814-6342314 bp Feature: domain Description: COG5659 Location: 6341838-6342297 bp Feature: domain Description: COG5659 Location: 6341 838-6342297 bp Feature: gene Location: 6342405-6343646 bp Feature: domain Description: HTH_32 Location: 6342498-6342651 bp Feature: domain Description: HTH_32 Location: 6342498-6342651 bp Feature: domain Description: HTH_32 Location: 6342744-6342957 bp Feature: domain Description: HTH_32 Location: 6342744-6342957 bp Feature: domain Description: DDE_3 Location: 6343080-6343512 bp Feature: domain Description: DDE_3 Location: 6343080-634351 2 bp Feature: gene Location: 6343862-6345268 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6344222-6344882 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6344222-6344882 bp Feature: domain Description: GIIM Note: maturase Location: 6344963-6345194 bp Feature: domain Description: GIIM Note: maturase Location: 6344963-63451 94 bp Feature: gene Location: 6345714-6346418 bp Feature: domain Description: DDE_5 Location: 6345966-6346392 bp Feature: domain Description: DDE_5 Location: 6345966-6346392 bp Feature: gene Location: 6346168-6346470 bp Feature: gene Location: 7546490-7547332 bp Feature: domain Description: YHI9 Location: 7546505-7547327 bp Feature: domain Description: YHI9 Location: 7546505-7547327 bp Feature: gene Location: 7547349-7547849 bp Feature: domain Description: PHZA_PHZB Location: 7547382-7547844 bp Feature: domain Description: PHZA_PHZB Location: 7547382-7547844 bp Feature: gene Location: 7548101-7549819 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7548365-7549061 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7548365-7549061 bp Feature: domain Description: GIIM Note: maturase Location: 7549133-7549319 bp Feature: domain Description: GIIM Note: maturase Location: 75491 33-754931 9 bp Feature: gene Location: 7549855-7551435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7549933-7550728 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7549933-7550728 bp Feature: domain Description: Intron_maturas2 Location: 7550824-7551058 bp Feature: domain Description: Intron_maturas2 Location: 7550824-7551 058 bp Feature: gene Location: 7551680-7552504 bp Feature: domain Description: DDE_Tnp_4 Location: 7552001-7552475 bp Feature: domain Description: DDE_Tnp_4 Location: 7552001 -7552475 bp Feature: gene Location: 7553431-7553817 bp Feature: gene Location: 8134997-8136466 bp Feature: domain Description: ALDH_KGSADH Location: 8135051-8136386 bp Feature: domain Description: ALDH_KGSADH Location: 81 35051 -81 36386 bp Feature: gene Location: 8136579-8137757 bp Feature: domain Description: HTH_32 Location: 8136753-8136906 bp Feature: domain Description: HTH_32 Location: 81 36753-81 36906 bp Feature: domain Description: HTH_32 Location: 8136999-8137212 bp Feature: domain Description: HTH_32 Location: 81 36999-81 3721 2 bp Feature: domain Description: DDE_3 Location: 8137335-8137701 bp Feature: domain Description: DDE_3 Location: 81 37335-81 37701 bp Feature: gene Location: 8138379-8140157 bp Feature: RT Description: RVT_N Location: 8138457-8138694 bp Feature: RT Description: RVT_N Location: 81 38457-81 38694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8138754-8139411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 38754-81 3941 1 bp Feature: domain Description: GIIM Note: maturase Location: 8139471-8139702 bp Feature: domain Description: GIIM Note: maturase Location: 81 39471 -81 39702 bp Feature: gene Location: 8140514-8140765 bp Feature: gene Location: 8141152-8141871 bp Feature: gene Location: 8215965-8216180 bp Feature: gene Location: 8215824-8217257 bp Feature: domain Description: DDE_5 Location: 8216058-8216871 bp Feature: domain Description: DDE_5 Location: 821 6058-821 6871 bp Feature: gene Location: 8217437-8218843 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8217797-8218457 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 821 7797-821 8457 bp Feature: domain Description: GIIM Note: maturase Location: 8218538-8218769 bp Feature: domain Description: GIIM Note: maturase Location: 821 8538-821 8769 bp Feature: gene Location: 8220395-8220622 bp Feature: gene Location: 8220684-8221649 bp Feature: domain Description: Peptidase_C39_2 Location: 8221149-8221569 bp Feature: domain Description: Peptidase_C39_2 Location: 8221 1 49-8221 569 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PEP_mutase (TIGR02320), HTH_32 (pfam13565), DDE_3 (pfam13358), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), AXO (cd01150), LysR (COG0583), DDE_Tnp_4 (pfam13359), Penicil_amidase (pfam01804)
M20_Acy1-like (cd08660), RsdA_SigD_bd (pfam16751), GlcD (COG0277), GlpC (COG0247), IS5 (COG3039), PRK02186 (argininosuccinate lyase; Provisional), eno (TIGR01060), Sialidase_non-viral (cd15482), COG5659 (SRSO17 transposase ), DDE_Tnp_1_2 (pfam13586)
DUF4096 (pfam13340), DDE_5 (pfam13546), IstB_IS21 (pfam01695), HTH_38 (pfam13936), COG4584 (Transposase ), Peptidase_C14 (pfam00656), KOG1803 (KOG1803, DNA helicase ), zf-ISL3 (pfam14690), rve_3 (pfam13683), YHI9 (COG0384)
PHZA_PHZB (pfam03284), Intron_maturas2 (pfam01348), ALDH_KGSADH (cd07129), Peptidase_C39_2 (pfam13529)