myRT

myRT report for GCA_002846615.1_ASM284661v1

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Seq: PJMY01000001.1 Amycolatopsis niigatensis strain DSM 45165 Ga0074778_11, whole genome shotgun sequence (353965 bp)
Overview 1 RT 1: 348608-351694 bp Neighborhood of RT #1 [348608, 351694] LT_TF_like RVT-GII Feature: gene Location: 348608-348739 bp Feature: gene Location: 348976-350124 bp Feature: domain Description: LT_TF_like Location: 349855-350110 bp Feature: domain Description: LT_TF_like Location: 349855-3501 1 0 bp Feature: gene Location: 350458-351255 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 350464-351079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 350464-351 079 bp Feature: gene Location: 351276-351428 bp Feature: gene Location: 351509-351694 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LT_TF_like, RVT-GII

Seq: PJMY01000002.1 Amycolatopsis niigatensis strain DSM 45165 Ga0074778_12, whole genome shotgun sequence (592464 bp)
Overview 1 RT 1: 524294-527523 bp Neighborhood of RT #1 [524294, 527523] pfam03781 RVT-CRISPR-like QueC Feature: gene Location: 524294-524782 bp Feature: gene Location: 524779-525336 bp Feature: domain Description: pfam03781 Location: 524923-525328 bp Feature: domain Description: pfam03781 Location: 52 492 3-52 532 8 bp Feature: gene Location: 525340-526119 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 525544-526081 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 52 5544-52 6081 bp Feature: gene Location: 526334-527098 bp Feature: domain Description: QueC Location: 526430-527090 bp Feature: domain Description: QueC Location: 52 6430-52 7090 bp Feature: gene Location: 527041-527523 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT pfam03781 (FGE-sulfatase;Sulfatase-modifying factor enzyme 1), RVT-CRISPR, QueC (pfam06508)

Seq: PJMY01000003.1 Amycolatopsis niigatensis strain DSM 45165 Ga0074778_13, whole genome shotgun sequence (8366534 bp)
Overview 1 RT 1: 2488712-2494840 bp 2 RT 2: 2499336-2504851 bp 3 RT 3: 4549948-4554809 bp Neighborhood of RT #1 [2488712, 2494992] IS285 DDE_Tnp_4 RVT-GII GIIM IS285 HTH_Tnp_4 Neighborhood of RT #2 [2499336, 2504886] XerD INT_tnpA_C_Tn554 COG4584 PRK09183 RVT-GII GIIM InsE PHA02517 Neighborhood of RT #3 [4549948, 4554877] RVT-Retrons HTH_MARR Voltage_gated_ClC CBS_pair_Sp... Feature: gene Location: 2488712-2489068 bp Feature: domain Description: IS285 Location: 2488745-2489057 bp Feature: domain Description: IS285 Location: 2488745-2489057 bp Feature: gene Location: 2489614-2490456 bp Feature: domain Description: DDE_Tnp_4 Location: 2489977-2490430 bp Feature: domain Description: DDE_Tnp_4 Location: 2489977-249043 0 bp Feature: gene Location: 2490612-2492075 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2490951-2491647 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2490951-2491647 bp Feature: domain Description: GIIM Note: maturase Location: 2491722-2491932 bp Feature: domain Description: GIIM Note: maturase Location: 2491722-249193 2 bp Feature: gene Location: 2492224-2492883 bp Feature: domain Description: IS285 Location: 2492230-2492854 bp Feature: domain Description: IS285 Location: 249223 0-2492854 bp Feature: gene Location: 2494585-2494992 bp Feature: domain Description: HTH_Tnp_4 Location: 2494687-2494840 bp Feature: domain Description: HTH_Tnp_4 Location: 2494687-2494840 bp Feature: gene Location: 2499336-2500439 bp Feature: domain Description: XerD Location: 2499417-2499711 bp Feature: domain Description: XerD Location: 2499417-2499711 bp Feature: domain Description: INT_tnpA_C_Tn554 Location: 2499852-2500383 bp Feature: domain Description: INT_tnpA_C_Tn554 Location: 2499852-25003 83 bp Feature: gene Location: 2500542-2502515 bp Feature: domain Description: COG4584 Location: 2500545-2501265 bp Feature: domain Description: COG4584 Location: 2500545-2501265 bp Feature: domain Description: PRK09183 Location: 2501889-2502501 bp Feature: domain Description: PRK09183 Location: 2501889-2502501 bp Feature: gene Location: 2502656-2504197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2503346-2504006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2503 3 46-2504006 bp Feature: domain Description: GIIM Note: maturase Location: 2504087-2504195 bp Feature: domain Description: GIIM Note: maturase Location: 2504087-2504195 bp Feature: gene Location: 2503715-2504005 bp Feature: domain Description: InsE Location: 2503736-2503994 bp Feature: domain Description: InsE Location: 2503 73 6-2503 994 bp Feature: gene Location: 2504053-2504886 bp Feature: domain Description: PHA02517 Location: 2504071-2504851 bp Feature: domain Description: PHA02517 Location: 2504071-2504851 bp Feature: gene Location: 4549948-4550142 bp Feature: gene Location: 4551002-4551385 bp Feature: gene Location: 4551515-4552588 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4551716-4552331 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4551716-45523 3 1 bp Feature: gene Location: 4552818-4553282 bp Feature: domain Description: HTH_MARR Location: 4552905-4553181 bp Feature: domain Description: HTH_MARR Location: 4552905-4553 181 bp Feature: gene Location: 4553333-4554877 bp Feature: domain Description: Voltage_gated_ClC Location: 4553369-4554515 bp Feature: domain Description: Voltage_gated_ClC Location: 4553 3 69-4554515 bp Feature: domain Description: CBS_pair_Sp... Location: 4554641-4554809 bp Feature: domain Description: CBS_pair_Sp... Location: 4554641-4554809 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), DDE_Tnp_4 (pfam13359), RVT-GII, GIIM (pfam08388), HTH_Tnp_4 (pfam13613), XerD (COG4974), INT_tnpA_C_Tn554 (cd01186), COG4584 (Transposase ), PRK09183 (transposase/IS protein; Provisional), InsE (COG2963)
PHA02517 (putative transposase OrfB; Reviewed), RVT-Retrons, HTH_MARR (smart00347), Voltage_gated_ClC (cl02915), CBS_pair_Sp...