myRT

myRT report for GCA_002846625.1_ASM284662v1

Download annotations/find similar RTs

Seq: PJNF01000001.1 Streptomyces sp. OK885 Ga0115513_11, whole genome shotgun sequence (6382433 bp)
Overview 1 RT 1: 1864928-1868668 bp 2 RT 2: 5704092-5710636 bp 3 RT 3: 6273880-6279116 bp Neighborhood of RT #1 [1864928, 1869765] RVT-GII Intron_maturas2 HipB Neighborhood of RT #2 [5704092, 5710869] PRK09636 MDR_like_2 RVT-GII Intron_maturas2 HNHc DUF899 PHA02517 Neighborhood of RT #3 [6273880, 6279202] DDE_Tnp_1 RVT-GII GIIM DDE_5 HTH_29 Feature: gene Location: 1864928-1865404 bp Feature: gene Location: 1865455-1865658 bp Feature: gene Location: 1865778-1867580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1866039-1866855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 866039-1 866855 bp Feature: domain Description: Intron_maturas2 Location: 1866990-1867203 bp Feature: domain Description: Intron_maturas2 Location: 1 866990-1 867203 bp Feature: gene Location: 1868102-1868323 bp Feature: gene Location: 1868428-1869765 bp Feature: domain Description: HipB Location: 1868446-1868668 bp Feature: domain Description: HipB Location: 1 868446-1 868668 bp Feature: gene Location: 5704092-5705030 bp Feature: domain Description: PRK09636 Location: 5704155-5705016 bp Feature: domain Description: PRK09636 Location: 57041 55-570501 6 bp Feature: gene Location: 5705116-5706033 bp Feature: domain Description: MDR_like_2 Location: 5705119-5706025 bp Feature: domain Description: MDR_like_2 Location: 57051 1 9-5706025 bp Feature: gene Location: 5706560-5708341 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5706821-5707616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5706821 -570761 6 bp Feature: domain Description: Intron_maturas2 Location: 5707730-5707940 bp Feature: domain Description: Intron_maturas2 Location: 5707730-5707940 bp Feature: domain Description: HNHc Note: nucleases Location: 5708138-5708297 bp Feature: domain Description: HNHc Note: nucleases Location: 57081 38-5708297 bp Feature: gene Location: 5709322-5710104 bp Feature: domain Description: DUF899 Location: 5709367-5709961 bp Feature: domain Description: DUF899 Location: 5709367-5709961 bp Feature: gene Location: 5710462-5710869 bp Feature: domain Description: PHA02517 Location: 5710480-5710636 bp Feature: domain Description: PHA0251 7 Location: 571 0480-571 0636 bp Feature: gene Location: 6273880-6274863 bp Feature: domain Description: DDE_Tnp_1 Location: 6274381-6274849 bp Feature: domain Description: DDE_Tnp_1 Location: 6274381 -6274849 bp Feature: gene Location: 6274760-6275149 bp Feature: gene Location: 6275850-6277214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6276189-6276828 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62761 89-6276828 bp Feature: domain Description: GIIM Note: maturase Location: 6276909-6277131 bp Feature: domain Description: GIIM Note: maturase Location: 6276909-62771 31 bp Feature: gene Location: 6277418-6278647 bp Feature: domain Description: DDE_5 Location: 6277430-6278216 bp Feature: domain Description: DDE_5 Location: 6277430-627821 6 bp Feature: gene Location: 6278834-6279202 bp Feature: domain Description: HTH_29 Location: 6278936-6279116 bp Feature: domain Description: HTH_29 Location: 6278936-62791 1 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HipB (COG1396), PRK09636 (RNA polymerase sigma factor SigJ; Provisional), MDR_like_2 (cd05289), HNHc (smart00507), DUF899 (pfam05988), PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_1 (pfam01609), GIIM (pfam08388)
DDE_5 (pfam13546), HTH_29 (pfam13551)

Seq: PJNF01000002.1 Streptomyces sp. OK885 Ga0115513_12, whole genome shotgun sequence (5760480 bp)
Overview 1 RT 1: 3430786-3437520 bp 2 RT 2: 3443365-3448473 bp 3 RT 3: 3480548-3486074 bp 4 RT 4: 3652622-3658531 bp 5 RT 5: 4220612-4224557 bp 6 RT 6: 4770248-4774850 bp 7 RT 7: 5677682-5682217 bp Neighborhood of RT #1 [3430786, 3437520] DUF4096 COG3293 RVT-GII GIIM Neighborhood of RT #2 [3443365, 3448514] HA DUF4096 COG3293 RVT-GII Intron_maturas2 HNHc Beta-lactamase Neighborhood of RT #3 [3480548, 3486133] HTH_MARR SgaA_N_like RVT-GII Intron_maturas2 HNHc DUF4096 Acetyltransf_1 Neighborhood of RT #4 [3652622, 3658584] RVT-GII Intron_maturas2 HNHc PRK05716 HTH_31 HTH_XRE Neighborhood of RT #5 [4220612, 4224592] DUF4096 RVT-GII Intron_maturas2 HNHc SLR SLR Neighborhood of RT #6 [4770248, 4774850] CE4_NodB_like_6s_7s RVT-GII GIIM COG3464 Neighborhood of RT #7 [5677682, 5682217] COG3464 RVT-GII Intron_maturas2 HNHc COG3464 Feature: gene Location: 3430786-3431415 bp Feature: domain Description: DUF4096 Location: 3430915-3431146 bp Feature: domain Description: DUF4096 Location: 3430915-3431146 bp Feature: domain Description: COG3293 Location: 3431293-3431398 bp Feature: domain Description: COG32 93 Location: 34312 93-3431398 bp Feature: gene Location: 3431660-3432187 bp Feature: gene Location: 3433281-3434711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3433602-3434289 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3433602 -34342 89 bp Feature: domain Description: GIIM Note: maturase Location: 3434361-3434589 bp Feature: domain Description: GIIM Note: maturase Location: 3434361-3434589 bp Feature: gene Location: 3435742-3435957 bp Feature: gene Location: 3436717-3437520 bp Feature: gene Location: 3443365-3443685 bp Feature: domain Description: HA Location: 3443383-3443515 bp Feature: domain Description: HA Location: 3443383-3443515 bp Feature: gene Location: 3444284-3445054 bp Feature: domain Description: DUF4096 Location: 3444317-3444557 bp Feature: domain Description: DUF4096 Location: 3444317-3444557 bp Feature: domain Description: COG3293 Location: 3444707-3444983 bp Feature: domain Description: COG32 93 Location: 3444707-3444983 bp Feature: gene Location: 3445514-3447295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3445775-3446570 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3445775-3446570 bp Feature: domain Description: Intron_maturas2 Location: 3446684-3446894 bp Feature: domain Description: Intron_maturas2 Location: 3446684-3446894 bp Feature: domain Description: HNHc Note: nucleases Location: 3447092-3447251 bp Feature: domain Description: HNHc Note: nucleases Location: 3447092 -34472 51 bp Feature: gene Location: 3447415-3447549 bp Feature: gene Location: 3447588-3448514 bp Feature: domain Description: Beta-lactamase Location: 3447597-3448473 bp Feature: domain Description: Beta-lactamase Location: 3447597-3448473 bp Feature: gene Location: 3480548-3481006 bp Feature: domain Description: HTH_MARR Location: 3480644-3480941 bp Feature: domain Description: HTH_MARR Location: 3480644-3480941 bp Feature: gene Location: 3481070-3481438 bp Feature: domain Description: SgaA_N_like Location: 3481091-3481427 bp Feature: domain Description: SgaA_N_like Location: 3481091-348142 7 bp Feature: gene Location: 3482249-3484030 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3482510-3483305 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3482 510-3483305 bp Feature: domain Description: Intron_maturas2 Location: 3483419-3483629 bp Feature: domain Description: Intron_maturas2 Location: 3483419-348362 9 bp Feature: domain Description: HNHc Note: nucleases Location: 3483827-3483986 bp Feature: domain Description: HNHc Note: nucleases Location: 348382 7-3483986 bp Feature: gene Location: 3484846-3485211 bp Feature: domain Description: DUF4096 Location: 3484852-3485062 bp Feature: domain Description: DUF4096 Location: 3484852 -3485062 bp Feature: gene Location: 3485309-3486133 bp Feature: domain Description: Acetyltransf_1 Location: 3485798-3486074 bp Feature: domain Description: Acetyltransf_1 Location: 3485798-3486074 bp Feature: gene Location: 3652622-3652891 bp Feature: gene Location: 3653278-3654384 bp Feature: gene Location: 3655335-3657119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3655596-3656397 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3655596-3656397 bp Feature: domain Description: Intron_maturas2 Location: 3656499-3656733 bp Feature: domain Description: Intron_maturas2 Location: 3656499-3656733 bp Feature: domain Description: HNHc Note: nucleases Location: 3656895-3657075 bp Feature: domain Description: HNHc Note: nucleases Location: 3656895-3657075 bp Feature: gene Location: 3657362-3658129 bp Feature: domain Description: PRK05716 Location: 3657365-3658124 bp Feature: domain Description: PRK05716 Location: 3657365-365812 4 bp Feature: gene Location: 3658276-3658584 bp Feature: domain Description: HTH_31 Location: 3658282-3658366 bp Feature: domain Description: HTH_31 Location: 36582 82 -3658366 bp Feature: domain Description: HTH_XRE Location: 3658474-3658531 bp Feature: domain Description: HTH_XRE Location: 3658474-3658531 bp Feature: gene Location: 4220612-4220998 bp Feature: domain Description: DUF4096 Location: 4220615-4220849 bp Feature: domain Description: DUF4096 Location: 42 2 0615-42 2 0849 bp Feature: gene Location: 4221070-4221354 bp Feature: gene Location: 4221814-4223595 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4222075-4222870 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 2 2 075-42 2 2 870 bp Feature: domain Description: Intron_maturas2 Location: 4222984-4223194 bp Feature: domain Description: Intron_maturas2 Location: 42 2 2 984-42 2 3194 bp Feature: domain Description: HNHc Note: nucleases Location: 4223392-4223551 bp Feature: domain Description: HNHc Note: nucleases Location: 42 2 3392 -42 2 3551 bp Feature: gene Location: 4223852-4224592 bp Feature: domain Description: SLR Location: 4223933-4224272 bp Feature: domain Description: SLR Location: 42 2 3933-42 2 42 72 bp Feature: domain Description: SLR Location: 4224302-4224557 bp Feature: domain Description: SLR Location: 42 2 4302 -42 2 4557 bp Feature: gene Location: 4770248-4770451 bp Feature: gene Location: 4770901-4771749 bp Feature: domain Description: CE4_NodB_like_6s_7s Location: 4771183-4771690 bp Feature: domain Description: CE4_NodB_like_6s_7s Location: 4771183-4771690 bp Feature: gene Location: 4771922-4773286 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4772261-4772900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4772 2 61-4772 900 bp Feature: domain Description: GIIM Note: maturase Location: 4772981-4773203 bp Feature: domain Description: GIIM Note: maturase Location: 4772 981-47732 03 bp Feature: gene Location: 4774026-4774598 bp Feature: domain Description: COG3464 Location: 4774377-4774593 bp Feature: domain Description: COG3464 Location: 4774377-4774593 bp Feature: gene Location: 4774704-4774850 bp Feature: gene Location: 5677682-5677960 bp Feature: gene Location: 5678046-5678819 bp Feature: domain Description: COG3464 Location: 5678163-5678748 bp Feature: domain Description: COG3464 Location: 5678163-5678748 bp Feature: gene Location: 5679284-5681068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5679545-5680346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5679545-5680346 bp Feature: domain Description: Intron_maturas2 Location: 5680448-5680682 bp Feature: domain Description: Intron_maturas2 Location: 5680448-5680682 bp Feature: domain Description: HNHc Note: nucleases Location: 5680844-5681024 bp Feature: domain Description: HNHc Note: nucleases Location: 5680844-568102 4 bp Feature: gene Location: 5681292-5682026 bp Feature: domain Description: COG3464 Location: 5681523-5682021 bp Feature: domain Description: COG3464 Location: 568152 3-5682 02 1 bp Feature: gene Location: 5682044-5682217 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4096 (pfam13340), COG3293 (Transposase ), RVT-GII, GIIM (pfam08388), HA (pfam03457), Intron_maturas2 (pfam01348), HNHc (smart00507), Beta-lactamase (pfam00144), HTH_MARR (smart00347), SgaA_N_like (cd07247)
Acetyltransf_1 (pfam00583), PRK05716 (methionine aminopeptidase; Validated), HTH_31 (pfam13560), HTH_XRE (smart00530), SLR (sd00010), CE4_NodB_like_6s_7s (cd10917), COG3464 (Transposase )

Seq: PJNF01000003.1 Streptomyces sp. OK885 Ga0115513_13, whole genome shotgun sequence (469384 bp)
Overview 1 RT 1: 69628-73955 bp 2 RT 2: 443366-449237 bp Neighborhood of RT #1 [69628, 74020] Ser_Recombinase COG3905 RVT-GII GIIM BcsQ Neighborhood of RT #2 [443366, 449272] RVT_N RVT-GII GIIM HNH Transposase_mut HAD_SAK_2 Feature: gene Location: 69628-69984 bp Feature: domain Description: Ser_Recombinase Location: 69646-69910 bp Feature: domain Description: Ser_Recombinase Location: 69646-69910 bp Feature: gene Location: 70117-70464 bp Feature: domain Description: COG3905 Location: 70318-70435 bp Feature: domain Description: COG3 905 Location: 703 18-7043 5 bp Feature: gene Location: 69835-71241 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70552-70858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 70552-70858 bp Feature: domain Description: GIIM Note: maturase Location: 70936-71155 bp Feature: domain Description: GIIM Note: maturase Location: 7093 6-71155 bp Feature: gene Location: 71756-72274 bp Feature: gene Location: 73121-74020 bp Feature: domain Description: BcsQ Location: 73124-73955 bp Feature: domain Description: BcsQ Location: 73 124-73 955 bp Feature: gene Location: 443366-443800 bp Feature: gene Location: 443882-444361 bp Feature: gene Location: 445698-447443 bp Feature: RT Description: RVT_N Location: 445761-446004 bp Feature: RT Description: RVT_N Location: 445761-446004 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 446055-446694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 446055-446694 bp Feature: domain Description: GIIM Note: maturase Location: 446748-446979 bp Feature: domain Description: GIIM Note: maturase Location: 446748-446979 bp Feature: domain Description: HNH Note: nucleases Location: 447300-447402 bp Feature: domain Description: HNH Note: nucleases Location: 4473 00-447402 bp Feature: gene Location: 447462-448778 bp Feature: domain Description: Transposase_mut Location: 447561-448683 bp Feature: domain Description: Transposase_mut Location: 447561-448683 bp Feature: gene Location: 448775-449272 bp Feature: domain Description: HAD_SAK_2 Location: 448802-449237 bp Feature: domain Description: HAD_SAK_2 Location: 448802-44923 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Ser_Recombinase (cl02788), RVT-GII, GIIM (pfam08388), COG3905 (Predicted transcriptional regulator ), BcsQ (COG1192), RVT_N (pfam13655), HNH (pfam01844), Transposase_mut (pfam00872), HAD_SAK_2 (pfam18143)