myRT

myRT report for GCA_002847725.1_ASM284772v1

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Seq: PKGY01000002.1 Aerococcus sanguinicola strain UMB0139 ERR1203654.17957_1_66.2, whole genome shotgun sequence (539990 bp)
Overview 1 RT 1: 237097-245822 bp Neighborhood of RT #1 [237097, 245908] Mod COG3587 RVT-Retrons PBP2_NikA_DppA_OppA_like Feature: gene Location: 237097-238971 bp Feature: domain Description: Mod Location: 237217-238450 bp Feature: domain Description: Mod Location: 23721 7-238450 bp Feature: gene Location: 238982-241957 bp Feature: domain Description: COG3587 Location: 238985-241928 bp Feature: domain Description: COG3587 Location: 238985-241 928 bp Feature: gene Location: 242118-243872 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 242259-242856 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 242259-242856 bp Feature: gene Location: 243974-244174 bp Feature: gene Location: 244265-245908 bp Feature: domain Description: PBP2_NikA_DppA_OppA_like Location: 244439-245822 bp Feature: domain Description: PBP2_NikA_DppA_OppA_like Location: 244439-245822 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Mod (COG2189), COG3587 (Restriction endonuclease ), RVT-Retrons, PBP2_NikA_DppA_OppA_like (cl01709)

Seq: PKGY01000005.1 Aerococcus sanguinicola strain UMB0139 ERR1203654.17957_1_66.5, whole genome shotgun sequence (118914 bp)
Overview 1 RT 1: 47333-58937 bp Neighborhood of RT #1 [47333, 58969] RVT_N RVT-GII GIIM PHA03411 COG4646 HELICc Cyt_C5_DNA_methylase Feature: gene Location: 47333-47989 bp Feature: gene Location: 48033-49361 bp Feature: gene Location: 49495-51165 bp Feature: RT Description: RVT_N Location: 49540-49783 bp Feature: RT Description: RVT_N Location: 49540-49783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49828-50476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4982 8-50476 bp Feature: domain Description: GIIM Note: maturase Location: 50530-50761 bp Feature: domain Description: GIIM Note: maturase Location: 50530-50761 bp Feature: gene Location: 51721-58017 bp Feature: domain Description: PHA03411 Location: 54238-54544 bp Feature: domain Description: PHA03411 Location: 542 38-54544 bp Feature: domain Description: COG4646 Location: 54859-57523 bp Feature: domain Description: COG4646 Location: 54859-5752 3 bp Feature: domain Description: HELICc Location: 57571-57937 bp Feature: domain Description: HELICc Location: 57571-57937 bp Feature: gene Location: 58004-58969 bp Feature: domain Description: Cyt_C5_DNA_methylase Location: 58019-58937 bp Feature: domain Description: Cyt_C5_DNA_methylase Location: 58019-58937 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), PHA03411 (putative methyltransferase; Provisional), COG4646 (Adenine-specific DNA methylase, N12 class ), HELICc (smart00490), Cyt_C5_DNA_methylase (cl30459)