myRT

myRT report for GCA_002848165.1_ASM284816v1

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Seq: PKGL01000122.1 Escherichia coli strain 10n contig122, whole genome shotgun sequence (3237 bp)
Overview 1 RT 1: 2-2786 bp Neighborhood of RT #1 [2, 3031] PHA02517 PHA02517 RVT-GII GIIM Feature: gene Location: 2-523 bp Feature: domain Description: PHA02517 Location: 188-524 bp Feature: domain Description: PHA0251 7 Location: 1 88-524 bp Feature: gene Location: 329-916 bp Feature: domain Description: PHA02517 Location: 515-851 bp Feature: domain Description: PHA0251 7 Location: 51 5-851 bp Feature: gene Location: 1508-3031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1781-2513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 781 -251 3 bp Feature: domain Description: GIIM Note: maturase Location: 2591-2786 bp Feature: domain Description: GIIM Note: maturase Location: 2591 -2786 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: PKGL01000045.1 Escherichia coli strain 10n contig45, whole genome shotgun sequence (108013 bp)
Overview 1 RT 1: 35587-39856 bp Neighborhood of RT #1 [35587, 39856] XdhC PBP2_CrgA_like_5 RVT-Retrons Feature: gene Location: 35587-36543 bp Feature: domain Description: XdhC Location: 35665-36520 bp Feature: domain Description: XdhC Location: 35665-3652 0 bp Feature: gene Location: 36522-36932 bp Feature: domain Description: PBP2_CrgA_like_5 Location: 36594-36906 bp Feature: domain Description: PBP2 _CrgA_like_5 Location: 36594-36906 bp Feature: gene Location: 37793-38725 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37895-38486 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 37895-38486 bp Feature: gene Location: 38712-39680 bp Feature: gene Location: 39713-39856 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XdhC (COG1975), PBP2_CrgA_like_5 (cd08474), RVT-Retrons

Seq: PKGL01000089.1 Escherichia coli strain 10n contig89, whole genome shotgun sequence (10415 bp)
Overview 1 RT 1: 3-6042 bp Neighborhood of RT #1 [3, 6042] PRK11447 RAYT RVT-GII GIIM Feature: gene Location: 3-2921 bp Feature: domain Description: PRK11447 Location: 6-2922 bp Feature: domain Description: PRK11447 Location: 6-2922 bp Feature: gene Location: 3268-3807 bp Feature: domain Description: RAYT Location: 3346-3709 bp Feature: domain Description: RAYT Location: 3 3 46-3 709 bp Feature: gene Location: 3961-5307 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4249-4867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4249-4867 bp Feature: domain Description: GIIM Note: maturase Location: 4915-5146 bp Feature: domain Description: GIIM Note: maturase Location: 4915-5146 bp Feature: gene Location: 5338-5535 bp Feature: gene Location: 5899-6042 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RAYT (COG1943), PRK11447 (cellulose synthase subunit BcsC; Provisional), RVT-GII, GIIM (pfam08388)