myRT

myRT report for GCA_002849165.1_ASM284916v1

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Seq: PKKX01000027.1 Escherichia coli strain JEONG-9598 NODE_37_length_47951_cov_11.1237_ID_73, whole genome shotgun sequence (47951 bp)
Overview 1 RT 1: 9820-13702 bp Neighborhood of RT #1 [9820, 13707] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 9820-10278 bp Feature: domain Description: dut Location: 9826-10273 bp Feature: domain Description: dut Location: 9826-1 0273 bp Feature: gene Location: 10385-10981 bp Feature: domain Description: slmA Location: 10391-10967 bp Feature: domain Description: slmA Location: 1 0391 -1 0967 bp Feature: gene Location: 11027-11986 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11162-11711 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 1 62-1 1 71 1 bp Feature: gene Location: 12284-12940 bp Feature: domain Description: pyrE Location: 12302-12935 bp Feature: domain Description: pyrE Location: 1 2302-1 2935 bp Feature: gene Location: 12991-13707 bp Feature: domain Description: rph Location: 12994-13702 bp Feature: domain Description: rph Location: 1 2994-1 3702 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173), dut (TIGR00576)

Seq: PKKX01000065.1 Escherichia coli strain JEONG-9598 NODE_61_length_24538_cov_18.2605_ID_121, whole genome shotgun sequence (24538 bp)
Overview 1 RT 1: 11750-16186 bp Neighborhood of RT #1 [11750, 16194] DDE_Tnp_IS1 InsA RVT-GII PRK10276 umuC Feature: gene Location: 11750-12127 bp Feature: domain Description: DDE_Tnp_IS1 Location: 11753-12125 bp Feature: domain Description: DDE_Tnp_IS1 Location: 11753-12 12 5 bp Feature: gene Location: 12172-12447 bp Feature: domain Description: InsA Location: 12175-12439 bp Feature: domain Description: InsA Location: 12 175-12 439 bp Feature: gene Location: 12599-14086 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13004-13694 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13004-13694 bp Feature: gene Location: 14240-14923 bp Feature: domain Description: PRK10276 Location: 14543-14906 bp Feature: domain Description: PRK102 76 Location: 14543-14906 bp Feature: gene Location: 14923-16194 bp Feature: domain Description: umuC Location: 14926-16186 bp Feature: domain Description: umuC Location: 1492 6-16186 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS1 (pfam03400), InsA (COG3677), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)