myRT

myRT report for GCA_002849305.1_ASM284930v1

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Seq: PKMV01000107.1 Klebsiella pneumoniae strain B2481 NODE_107_length_3129_cov_51.8281_ID_213, whole genome shotgun sequence (3129 bp)
Overview 1 RT 1: 450-3128 bp Neighborhood of RT #1 [450, 3128] DDE_Tnp_IS1 InsA RVT-GII Feature: gene Location: 450-827 bp Feature: domain Description: DDE_Tnp_IS1 Location: 453-825 bp Feature: domain Description: DDE_Tnp_IS1 Location: 453-825 bp Feature: gene Location: 872-1147 bp Feature: domain Description: InsA Location: 875-1139 bp Feature: domain Description: InsA Location: 875-1 1 39 bp Feature: gene Location: 1299-2786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1704-2394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 704-2394 bp Feature: gene Location: 2940-3128 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS1 (pfam03400), InsA (COG3677), RVT-GII

Seq: PKMV01000120.1 Klebsiella pneumoniae strain B2481 NODE_120_length_1915_cov_306.181_ID_239, whole genome shotgun sequence (1915 bp)
Overview 1 RT 1: 71-1610 bp Neighborhood of RT #1 [71, 1610] RVT-GII GIIM Feature: gene Location: 71-1426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 365-989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 365-989 bp Feature: domain Description: GIIM Note: maturase Location: 1028-1247 bp Feature: domain Description: GIIM Note: maturase Location: 102 8-12 47 bp Feature: gene Location: 1479-1610 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PKMV01000004.1 Klebsiella pneumoniae strain B2481 NODE_4_length_205600_cov_16.4008_ID_7, whole genome shotgun sequence (205600 bp)
Overview 1 RT 1: 83022-88322 bp Neighborhood of RT #1 [83022, 88327] PRK15110 PRK09951 RVT-UG11 umuC PRK10276 Feature: gene Location: 83022-83987 bp Feature: domain Description: PRK15110 Location: 83025-83985 bp Feature: domain Description: PRK15110 Location: 83 025-83 985 bp Feature: gene Location: 84191-84859 bp Feature: domain Description: PRK09951 Location: 84194-84857 bp Feature: domain Description: PRK09951 Location: 84194-84857 bp Feature: gene Location: 85060-85968 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 85333-85789 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 853 3 3 -85789 bp Feature: gene Location: 86641-87906 bp Feature: domain Description: umuC Location: 86644-87904 bp Feature: domain Description: umuC Location: 86644-87904 bp Feature: gene Location: 87908-88327 bp Feature: domain Description: PRK10276 Location: 87911-88322 bp Feature: domain Description: PRK10276 Location: 87911-883 22 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK15110 (peptide ABC transporter permease SapB), PRK09951 (hypothetical protein; Provisional), RVT-UG11, umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: PKMV01000079.1 Klebsiella pneumoniae strain B2481 NODE_79_length_16278_cov_71.8695_ID_157, whole genome shotgun sequence (16278 bp)
Overview 1 RT 1: 2-4068 bp Neighborhood of RT #1 [2, 4070] RVT_N RVT-GII GIIM HNHc DUF1380 Antirestrict Feature: gene Location: 2-127 bp Feature: gene Location: 158-433 bp Feature: gene Location: 1007-2674 bp Feature: domain Description: RVT_N Location: 1055-1292 bp Feature: domain Description: RVT_N Location: 1055-1292 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1343-1985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 134 3-1985 bp Feature: domain Description: GIIM Note: maturase Location: 2036-2270 bp Feature: domain Description: GIIM Note: maturase Location: 2036-2270 bp Feature: domain Description: HNHc Note: nucleases Location: 2480-2639 bp Feature: domain Description: HNHc Note: nucleases Location: 24 80-2639 bp Feature: gene Location: 3176-3598 bp Feature: domain Description: DUF1380 Location: 3179-3476 bp Feature: domain Description: DUF1380 Location: 3179-34 76 bp Feature: gene Location: 3645-4070 bp Feature: domain Description: Antirestrict Location: 3780-4068 bp Feature: domain Description: Antirestrict Location: 3780-4 068 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128), Antirestrict (pfam03230)