myRT

myRT report for GCA_002850805.1_ASM285080v1

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Seq: NCMU01000019.1 Klebsiella pneumoniae strain COL-Kpn41 contig_14_1, whole genome shotgun sequence (173523 bp)
Overview 1 RT 1: 134554-141422 bp Neighborhood of RT #1 [134554, 141424] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Feature: gene Location: 134554-135282 bp Feature: domain Description: FimC Location: 134602-135265 bp Feature: domain Description: FimC Location: 1 34602-1 35265 bp Feature: gene Location: 135314-137923 bp Feature: domain Description: FimD Location: 135371-137912 bp Feature: domain Description: FimD Location: 1 35371 -1 3791 2 bp Feature: gene Location: 137923-140001 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 138331-138775 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 38331 -1 38775 bp Feature: gene Location: 140058-140498 bp Feature: domain Description: Integrase_1 Location: 140064-140280 bp Feature: domain Description: Integrase_1 Location: 1 40064-1 40280 bp Feature: gene Location: 140759-141424 bp Feature: domain Description: INT_P4_C Location: 140864-141422 bp Feature: domain Description: INT_P4_C Location: 1 40864-1 41 422 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), INT_P4_C (cd00801)

Seq: NCMU01000032.1 Klebsiella pneumoniae strain COL-Kpn41 contig_25_1, whole genome shotgun sequence (13018 bp)
Overview 1 RT 1: 408-4844 bp Neighborhood of RT #1 [408, 4852] DDE_Tnp_IS1 InsA RVT-GII PRK10276 umuC Feature: gene Location: 408-785 bp Feature: domain Description: DDE_Tnp_IS1 Location: 411-783 bp Feature: domain Description: DDE_Tnp_IS1 Location: 411-783 bp Feature: gene Location: 830-1105 bp Feature: domain Description: InsA Location: 833-1097 bp Feature: domain Description: InsA Location: 833-1097 bp Feature: gene Location: 1257-2744 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1662-2352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1662 -2 352 bp Feature: gene Location: 2769-3581 bp Feature: domain Description: PRK10276 Location: 3201-3564 bp Feature: domain Description: PRK102 76 Location: 32 01-3564 bp Feature: gene Location: 3581-4852 bp Feature: domain Description: umuC Location: 3584-4844 bp Feature: domain Description: umuC Location: 3584-4844 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS1 (pfam03400), InsA (COG3677), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)

Seq: NCMU01000037.1 Klebsiella pneumoniae strain COL-Kpn41 contig_30, whole genome shotgun sequence (35481 bp)
Overview 1 RT 1: 13882-17152 bp Neighborhood of RT #1 [13882, 17166] RVT-GII PRK10276 Feature: gene Location: 13882-14097 bp Feature: gene Location: 14364-14594 bp Feature: gene Location: 14828-16339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15233-15947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1523 3 -15947 bp Feature: gene Location: 16390-16623 bp Feature: gene Location: 16741-17166 bp Feature: domain Description: PRK10276 Location: 16744-17152 bp Feature: domain Description: PRK10276 Location: 16744-17152 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)