myRT

myRT report for GCA_002850885.1_ASM285088v1

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Seq: NCMN01000055.1 Klebsiella pneumoniae strain COL-Kpn34 contig_23, whole genome shotgun sequence (23471 bp)
Overview 1 RT 1: 13882-17152 bp Neighborhood of RT #1 [13882, 17166] RVT-GII PRK10276 Feature: gene Location: 13882-14097 bp Feature: gene Location: 14364-14594 bp Feature: gene Location: 14828-16339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15233-15947 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 5233-1 5947 bp Feature: gene Location: 16390-16623 bp Feature: gene Location: 16741-17166 bp Feature: domain Description: PRK10276 Location: 16744-17152 bp Feature: domain Description: PRK1 0276 Location: 1 6744-1 71 52 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: NCMN01000075.1 Klebsiella pneumoniae strain COL-Kpn34 contig_37_0, whole genome shotgun sequence (13016 bp)
Overview 1 RT 1: 8166-12608 bp Neighborhood of RT #1 [8166, 12610] umuC PRK10276 RVT-GII InsA DDE_Tnp_IS1 Feature: gene Location: 8166-9437 bp Feature: domain Description: umuC Location: 8169-9429 bp Feature: domain Description: umuC Location: 8169-942 9 bp Feature: gene Location: 9437-10249 bp Feature: domain Description: PRK10276 Location: 9869-10232 bp Feature: domain Description: PRK102 76 Location: 9869-102 32 bp Feature: gene Location: 10274-11761 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10679-11369 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10679-11369 bp Feature: gene Location: 11913-12188 bp Feature: domain Description: InsA Location: 11916-12180 bp Feature: domain Description: InsA Location: 11916-12 180 bp Feature: gene Location: 12107-12610 bp Feature: domain Description: DDE_Tnp_IS1 Location: 12218-12608 bp Feature: domain Description: DDE_Tnp_IS1 Location: 12 2 18-12 608 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, InsA (COG3677), DDE_Tnp_IS1 (pfam03400)

Seq: NCMN01000009.1 Klebsiella pneumoniae strain COL-Kpn34 contig_4_2, whole genome shotgun sequence (142070 bp)
Overview 1 RT 1: 134553-141421 bp Neighborhood of RT #1 [134553, 141423] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Feature: gene Location: 134553-135281 bp Feature: domain Description: FimC Location: 134601-135264 bp Feature: domain Description: FimC Location: 13 4601-13 5264 bp Feature: gene Location: 135313-137922 bp Feature: domain Description: FimD Location: 135370-137911 bp Feature: domain Description: FimD Location: 13 53 70-13 7911 bp Feature: gene Location: 137922-140000 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 138330-138774 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 13 83 3 0-13 8774 bp Feature: gene Location: 140057-140497 bp Feature: domain Description: Integrase_1 Location: 140063-140279 bp Feature: domain Description: Integrase_1 Location: 140063 -140279 bp Feature: gene Location: 140758-141423 bp Feature: domain Description: INT_P4_C Location: 140863-141421 bp Feature: domain Description: INT_P4_C Location: 140863 -141421 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), INT_P4_C (cd00801)