myRT

myRT report for GCA_002850935.1_ASM285093v1

Download annotations/find similar RTs

Seq: NCMM01000047.1 Klebsiella pneumoniae strain COL-Kpn33 contig_26_1, whole genome shotgun sequence (142072 bp)
Overview 1 RT 1: 134554-141422 bp Neighborhood of RT #1 [134554, 141424] FimC FimD RVT-UG4 Integrase_1 INT_P4_C Feature: gene Location: 134554-135282 bp Feature: domain Description: FimC Location: 134602-135265 bp Feature: domain Description: FimC Location: 1 34602-1 35265 bp Feature: gene Location: 135314-137923 bp Feature: domain Description: FimD Location: 135371-137912 bp Feature: domain Description: FimD Location: 1 35371 -1 3791 2 bp Feature: gene Location: 137923-140001 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 138331-138775 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1 38331 -1 38775 bp Feature: gene Location: 140058-140498 bp Feature: domain Description: Integrase_1 Location: 140064-140280 bp Feature: domain Description: Integrase_1 Location: 1 40064-1 40280 bp Feature: gene Location: 140759-141424 bp Feature: domain Description: INT_P4_C Location: 140864-141422 bp Feature: domain Description: INT_P4_C Location: 1 40864-1 41 422 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FimC (COG3121), FimD (COG3188), RVT-UG4, Integrase_1 (pfam12835), INT_P4_C (cd00801)

Seq: NCMM01000068.1 Klebsiella pneumoniae strain COL-Kpn33 contig_43, whole genome shotgun sequence (13018 bp)
Overview 1 RT 1: 8167-12609 bp Neighborhood of RT #1 [8167, 12611] umuC PRK10276 RVT-GII InsA DDE_Tnp_IS1 Feature: gene Location: 8167-9438 bp Feature: domain Description: umuC Location: 8170-9430 bp Feature: domain Description: umuC Location: 8170-9430 bp Feature: gene Location: 9438-10250 bp Feature: domain Description: PRK10276 Location: 9870-10233 bp Feature: domain Description: PRK102 76 Location: 9870-102 33 bp Feature: gene Location: 10275-11762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10680-11370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10680-11370 bp Feature: gene Location: 11914-12189 bp Feature: domain Description: InsA Location: 11917-12181 bp Feature: domain Description: InsA Location: 11917-12 181 bp Feature: gene Location: 12108-12611 bp Feature: domain Description: DDE_Tnp_IS1 Location: 12219-12609 bp Feature: domain Description: DDE_Tnp_IS1 Location: 12 2 19-12 609 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, InsA (COG3677), DDE_Tnp_IS1 (pfam03400)

Seq: NCMM01000018.1 Klebsiella pneumoniae strain COL-Kpn33 contig_8_1, whole genome shotgun sequence (35010 bp)
Overview 1 RT 1: 17845-21029 bp Neighborhood of RT #1 [17845, 21029] PRK10276 RVT-GII Feature: gene Location: 17845-18270 bp Feature: domain Description: PRK10276 Location: 17848-18256 bp Feature: domain Description: PRK10276 Location: 17848-18256 bp Feature: gene Location: 18388-18621 bp Feature: gene Location: 18672-20183 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19077-19791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 19077-19791 bp Feature: gene Location: 20417-20647 bp Feature: gene Location: 20706-21029 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII